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Plau plasminogen activator, urokinase [ Rattus norvegicus (Norway rat) ]

Gene ID: 25619, updated on 21-Jul-2018

Summary

Official Symbol
Plauprovided by RGD
Official Full Name
plasminogen activator, urokinaseprovided by RGD
Primary source
RGD:3343
See related
Ensembl:ENSRNOG00000010516
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
UPAM
Summary
displays a post-transcriptional increase in enzyme levels in chemically induced mammary carcinoma; may play a role in tumor invasion and metastasis [RGD, Feb 2006]
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Expression
Biased expression in Kidney (RPKM 2347.6), Muscle (RPKM 197.9) and 1 other tissue See more
Orthologs

Genomic context

See Plau in Genome Data Viewer
Location:
15p16
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (3644296..3650765, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (3621057..3627467, complement)

Chromosome 15 - NC_005114.4Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 3 subunit mu 1 Neighboring gene vinculin Neighboring gene uncharacterized LOC108352872 Neighboring gene calcium/calmodulin-dependent protein kinase II gamma

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • MGC124931

Gene Ontology Provided by RGD

Function Evidence Code Pubs
kinase activity IEA
Inferred from Electronic Annotation
more info
 
peptidase activity IDA
Inferred from Direct Assay
more info
PubMed 
serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
angiogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to fluid shear stress IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to glucose stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to hepatocyte growth factor stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to lipopolysaccharide IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to organic substance IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to staurosporine IEP
Inferred from Expression Pattern
more info
PubMed 
embryo implantation IEP
Inferred from Expression Pattern
more info
PubMed 
fibrinolysis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fibrinolysis IEA
Inferred from Electronic Annotation
more info
 
fibrinolysis ISO
Inferred from Sequence Orthology
more info
 
neuron death IMP
Inferred from Mutant Phenotype
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
plasminogen activation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasminogen activation IEA
Inferred from Electronic Annotation
more info
 
plasminogen activation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of ovulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of reactive oxygen species metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of smooth muscle cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
proteolysis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell adhesion mediated by integrin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 
regulation of cell adhesion mediated by integrin ISO
Inferred from Sequence Orthology
more info
 
regulation of cell proliferation IEA
Inferred from Electronic Annotation
more info
 
regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
regulation of hepatocyte proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 
regulation of signaling receptor activity ISO
Inferred from Sequence Orthology
more info
 
regulation of smooth muscle cell migration IEA
Inferred from Electronic Annotation
more info
 
regulation of smooth muscle cell migration ISO
Inferred from Sequence Orthology
more info
 
regulation of smooth muscle cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 
regulation of smooth muscle cell-matrix adhesion ISO
Inferred from Sequence Orthology
more info
 
response to activity IEP
Inferred from Expression Pattern
more info
PubMed 
response to hepatocyte growth factor IEP
Inferred from Expression Pattern
more info
PubMed 
response to hyperoxia IEP
Inferred from Expression Pattern
more info
PubMed 
response to hypoxia IEA
Inferred from Electronic Annotation
more info
 
response to hypoxia ISO
Inferred from Sequence Orthology
more info
 
skeletal muscle tissue regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
smooth muscle cell migration IEA
Inferred from Electronic Annotation
more info
 
smooth muscle cell migration ISO
Inferred from Sequence Orthology
more info
 
spermatogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
wound healing IEP
Inferred from Expression Pattern
more info
PubMed 
wound healing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell surface IEA
Inferred from Electronic Annotation
more info
 
cell surface ISO
Inferred from Sequence Orthology
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space IEA
Inferred from Electronic Annotation
more info
 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
urokinase-type plasminogen activator
Names
U-plasminogen activator
Urinary plasminogen activator, urokinase
uPA
urokinase plasminogen activator
NP_037217.3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013085.3NP_037217.3  urokinase-type plasminogen activator precursor

    See identical proteins and their annotated locations for NP_037217.3

    Status: PROVISIONAL

    Source sequence(s)
    BC105859
    UniProtKB/TrEMBL
    Q3KR76
    Related
    ENSRNOP00000014273.3, ENSRNOT00000014273.5
    Conserved Domains (3) summary
    smart00020
    Location:178420
    Tryp_SPc; Trypsin-like serine protease
    cd00108
    Location:67152
    KR; Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and ...
    cd00190
    Location:179423
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005114.4 Reference Rnor_6.0 Primary Assembly

    Range
    3644296..3650765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000083.1 Alternate Rn_Celera

    Range
    1129191..1135694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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