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LINC01619 long intergenic non-protein coding RNA 1619 [ Homo sapiens (human) ]

Gene ID: 256021, updated on 13-Feb-2019

Summary

Official Symbol
LINC01619provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1619provided by HGNC
Primary source
HGNC:HGNC:27409
See related
Ensembl:ENSG00000257242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C12orf79
Expression
Biased expression in bone marrow (RPKM 7.3), lymph node (RPKM 0.9) and 6 other tissues See more
Orthologs

Genomic context

See LINC01619 in Genome Data Viewer
Location:
12q21.33
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 12 NC_000012.12 (91984976..92142831, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (92378752..92536447, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2404 Neighboring gene uncharacterized LOC105369901 Neighboring gene uncharacterized LOC101928617 Neighboring gene uncharacterized LOC107984023 Neighboring gene BTG anti-proliferation factor 1 Neighboring gene ribosomal protein L21 pseudogene 106

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046159.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains an alternate 5' exon and an additional internal exon, and uses an alternate splice site in another internal exon, compared to variant 1.
    Source sequence(s)
    BC029844, CA438667
    Related
    ENST00000551843.5
  2. NR_046160.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an additional internal exon and uses an alternate splice site in another internal exon, compared to variant 1.
    Source sequence(s)
    BC029844, BC118985, CA438667, DB121637
  3. NR_132339.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK055439, BC029844, CA438667, DB121637
    Related
    ENST00000549802.5
  4. NR_132340.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    BC029844, BC107595, CA438667, DB121637
  5. NR_132341.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses two alternate splice sites in an internal exon, compared to variant 1.
    Source sequence(s)
    BC029844, BC122534, CA438667, DB121637

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p12 Primary Assembly

    Range
    91984976..92142831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001256373.1: Suppressed sequence

    Description
    NM_001256373.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
  2. NM_001256374.1: Suppressed sequence

    Description
    NM_001256374.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
  3. NM_001256375.1: Suppressed sequence

    Description
    NM_001256375.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
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