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C19orf38 chromosome 19 open reading frame 38 [ Homo sapiens (human) ]

Gene ID: 255809, updated on 25-Jan-2022

Summary

Official Symbol
C19orf38provided by HGNC
Official Full Name
chromosome 19 open reading frame 38provided by HGNC
Primary source
HGNC:HGNC:34073
See related
Ensembl:ENSG00000214212 AllianceGenome:HGNC:34073
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HIDE1
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in bone marrow (RPKM 25.7), spleen (RPKM 5.5) and 5 other tissues See more
Orthologs
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Genomic context

See C19orf38 in Genome Data Viewer
Location:
19p13.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (10836558..10869796)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (10959091..10980466)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene dynamin 2 Neighboring gene microRNA 6793 Neighboring gene HIKESHI pseudogene 2 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene coactivator associated arginine methyltransferase 1 Neighboring gene Yip1 domain family member 2 Neighboring gene translocase of inner mitochondrial membrane 29

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein HIDE1
Names
Highly expressed in immature dendritic cell transcript 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136482.3NP_001129954.1  protein HIDE1 precursor

    See identical proteins and their annotated locations for NP_001129954.1

    Status: VALIDATED

    Source sequence(s)
    AC007565
    Consensus CDS
    CCDS45970.1
    UniProtKB/Swiss-Prot
    A8MVS5
    Related
    ENSP00000380920.3, ENST00000397820.5
    Conserved Domains (1) summary
    pfam13895
    Location:1791
    Ig_2; Immunoglobulin domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    10836558..10869796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259847.5XP_005259904.1  protein HIDE1 isoform X1

    See identical proteins and their annotated locations for XP_005259904.1

    UniProtKB/Swiss-Prot
    A8MVS5
    Related
    ENSP00000468568.1, ENST00000592854.5
    Conserved Domains (1) summary
    pfam13895
    Location:1791
    Ig_2; Immunoglobulin domain
  2. XM_005259846.5XP_005259903.1  protein HIDE1 isoform X1

    See identical proteins and their annotated locations for XP_005259903.1

    UniProtKB/Swiss-Prot
    A8MVS5
    Conserved Domains (1) summary
    pfam13895
    Location:1791
    Ig_2; Immunoglobulin domain
  3. XM_024451448.1XP_024307216.1  protein HIDE1 isoform X2

    Conserved Domains (1) summary
    pfam13895
    Location:1791
    Ig_2; Immunoglobulin domain
  4. XM_024451449.1XP_024307217.1  protein HIDE1 isoform X3

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