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PDZD9 PDZ domain containing 9 [ Homo sapiens (human) ]

Gene ID: 255762, updated on 26-Oct-2022

Summary

Official Symbol
PDZD9provided by HGNC
Official Full Name
PDZ domain containing 9provided by HGNC
Primary source
HGNC:HGNC:28740
See related
Ensembl:ENSG00000155714 AllianceGenome:HGNC:28740
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C16orf65
Expression
Broad expression in testis (RPKM 11.6), heart (RPKM 5.2) and 25 other tissues See more
Orthologs
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Genomic context

See PDZD9 in Genome Data Viewer
Location:
16p12.2
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (21957540..22001116, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (22216077..22233326)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (21995186..22012437, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 4 Neighboring gene ABCA3 pseudogene 1 Neighboring gene ubiquinol-cytochrome c reductase core protein 2 Neighboring gene cell division cycle associated 8 pseudogene Neighboring gene islet cell autoantigen 1, 69kDa pseudogene Neighboring gene modulator of smoothened Neighboring gene uncharacterized LOC124903665 Neighboring gene uncharacterized LOC105371129

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC50721

General protein information

Preferred Names
PDZ domain-containing protein 9
Names
PDZ domain-containing protein C16orf65

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363519.1NP_001350448.1  PDZ domain-containing protein 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC092119
    Consensus CDS
    CCDS92124.1
    UniProtKB/Swiss-Prot
    F5GWW8
    Related
    ENSP00000400514.2, ENST00000424898.3
    Conserved Domains (1) summary
    cd00992
    Location:39106
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  2. NM_001370530.1NP_001357459.1  PDZ domain-containing protein 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC092119
  3. NM_173806.4NP_776167.2  PDZ domain-containing protein 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC092119
    Consensus CDS
    CCDS10602.2
    UniProtKB/Swiss-Prot
    Q8IXQ8
    Related
    ENSP00000441685.2, ENST00000537222.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    21957540..22001116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023109.2XP_016878598.1  PDZ domain-containing protein 9 isoform X1

  2. XM_047433888.1XP_047289844.1  PDZ domain-containing protein 9 isoform X2

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p14 PATCHES

    Range
    1103923..1121173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    22216077..22233326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)