U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TBX5-AS1 TBX5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 255480, updated on 5-Feb-2024

Summary

Official Symbol
TBX5-AS1provided by HGNC
Official Full Name
TBX5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27402
See related
Ensembl:ENSG00000255399 AllianceGenome:HGNC:27402
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in placenta (RPKM 8.9), lung (RPKM 6.6) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TBX5-AS1 in Genome Data Viewer
Location:
12q24.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (114408195..114412832)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (114384933..114389570)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (114846000..114850637)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369995 Neighboring gene glutamate-ammonia ligase pseudogene 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24844 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24865 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:114601036-114602235 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:114676508-114676718 Neighboring gene Sharpr-MPRA regulatory region 11920 Neighboring gene long intergenic non-protein coding RNA 2459 Neighboring gene CRE9 enhancer downstream of TBX5 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114723717-114724462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114739578-114740104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114740105-114740631 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:114773645-114774145 Neighboring gene T-box transcription factor 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114843151-114843837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114843876-114844376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114847097-114847637 Neighboring gene uncharacterized LOC105369998 Neighboring gene CRE16 enhancer upstream of TBX5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114876822-114877445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114878069-114878691 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114878692-114879313 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114881262-114881765 Neighboring gene RN7SK pseudogene 216

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • TBX5 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038440.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069240, AK091766, BM970213, CB992854
    Related
    ENST00000528549.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    114408195..114412832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    114384933..114389570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)