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TEX49 testis expressed 49 [ Homo sapiens (human) ]

Gene ID: 255411, updated on 5-Aug-2022

Summary

Official Symbol
TEX49provided by HGNC
Official Full Name
testis expressed 49provided by HGNC
Primary source
HGNC:HGNC:48628
See related
Ensembl:ENSG00000257987 AllianceGenome:HGNC:48628
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00935
Expression
Restricted expression toward testis (RPKM 4.8) See more
Orthologs
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Genomic context

See TEX49 in Genome Data Viewer
Location:
12q13.12
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (48727435..48771459)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (48689465..48727817)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (49121218..49159573)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene small nucleolar RNA, H/ACA box 2B Neighboring gene cyclin T1 Neighboring gene adenylate cyclase 6 Neighboring gene microRNA 4701 Neighboring gene ADCY6 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ27495

General protein information

Preferred Names
testis-expressed protein 49
Names
long intergenic non-protein coding RNA 935

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351123.2NP_001338052.1  testis-expressed protein 49 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC079951, BC036043
    Consensus CDS
    CCDS86296.1
    UniProtKB/Swiss-Prot
    A0A1B0GTD5
    Related
    ENSP00000489652.1, ENST00000548380.6
  2. NM_001351125.2NP_001338054.1  testis-expressed protein 49 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC079951, BC036043, BC054859

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    48727435..48771459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024448926.2XP_024304694.1  testis-expressed protein 49 isoform X1

  2. XM_024448927.2XP_024304695.1  testis-expressed protein 49 isoform X2

RNA

  1. XR_002957306.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    48689465..48727817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)