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LINC01018 long intergenic non-protein coding RNA 1018 [ Homo sapiens (human) ]

Gene ID: 255167, updated on 6-Nov-2022

Summary

Official Symbol
LINC01018provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1018provided by HGNC
Primary source
HGNC:HGNC:27394
See related
Ensembl:ENSG00000250056 MIM:616385; AllianceGenome:HGNC:27394
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SRHC
Expression
Biased expression in liver (RPKM 18.7), ovary (RPKM 7.1) and 2 other tissues See more
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Genomic context

See LINC01018 in Genome Data Viewer
Location:
5p15.31
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (6582136..6588500)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (6512544..6518915)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (6582249..6588613)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900933 Neighboring gene uncharacterized LOC105374639 Neighboring gene ubiquitin conjugating enzyme E2 Q family like 1 Neighboring gene NOP2/Sun RNA methyltransferase 2 Neighboring gene steroid 5 alpha-reductase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024423.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains alternate 5' exons, compared to variant 1.
    Source sequence(s)
    AK125283, BC043253, DA240476, DB572334
    Related
    ENST00000505626.6
  2. NR_024424.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK125283, BC043253, BC106918, BI602592, DB572334
    Related
    ENST00000664093.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    6582136..6588500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    6512544..6518915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)