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CASC2 cancer susceptibility 2 [ Homo sapiens (human) ]

Gene ID: 255082, updated on 24-Nov-2020

Summary

Official Symbol
CASC2provided by HGNC
Official Full Name
cancer susceptibility 2provided by HGNC
Primary source
HGNC:HGNC:22933
See related
Ensembl:ENSG00000177640 MIM:608598
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf5
Expression
Broad expression in thyroid (RPKM 1.0), brain (RPKM 1.0) and 22 other tissues See more

Genomic context

See CASC2 in Genome Data Viewer
Location:
10q26.11
Exon count:
6
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (118046821..118210153)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (119806332..119969665)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378504 Neighboring gene VISTA enhancer hs1551 Neighboring gene RAB11 family interacting protein 2 Neighboring gene uncharacterized LOC101927760 Neighboring gene VISTA enhancer hs672 Neighboring gene family with sequence similarity 204 member A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • cancer susceptibility 2 (non-protein coding)
  • cancer susceptibility candidate 2 (non-protein coding)

Clone Names

  • MGC117219

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026939.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC005879, AC022395, AI219353, BC036393, BC112306
    Related
    ENST00000435944.5
  2. NR_026940.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 3' region, compared to variant 1.
    Source sequence(s)
    AC005879, AC022395, AI219353, AJ535621, BC036393
    Related
    ENST00000665675.1
  3. NR_026941.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AC022395, AJ344228, BC036393, BC112326

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    118046821..118210153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178816.2: Suppressed sequence

    Description
    NM_178816.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NM_201377.1: Suppressed sequence

    Description
    NM_201377.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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