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LINC00957 long intergenic non-protein coding RNA 957 [ Homo sapiens (human) ]

Gene ID: 255031, updated on 23-Nov-2021

Summary

Official Symbol
LINC00957provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 957provided by HGNC
Primary source
HGNC:HGNC:22332
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 4.3), spleen (RPKM 4.3) and 25 other tissues See more
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Genomic context

See LINC00957 in Genome Data Viewer
Location:
7p13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (44039049..44044296)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (44078648..44083895)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene upregulator of cell proliferation Neighboring gene ubiquitin conjugating enzyme E2 D4 (putative) Neighboring gene RNA polymerase II subunit J4, pseudogene Neighboring gene speedy/RINGO cell cycle regulator family member E1 Neighboring gene RAS p21 protein activator 4C, pseudogene Neighboring gene microRNA 6837 Neighboring gene drebrin like Neighboring gene phosphoglycerate mutase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015401.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longest transcript.
    Source sequence(s)
    BC024303, BC081571, DA776150
  2. NR_072981.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site and an alternate terminal exon, compared to variant 2.
    Source sequence(s)
    DA293391, DA406714, DA776150
  3. NR_072982.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses two alternate splice sites and an alternate terminal exon, compared to variant 2.
    Source sequence(s)
    DA204840, DA406714, DA776150

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    44039049..44044296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_024416.1: Suppressed sequence

    Description
    NR_024416.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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