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C11orf86 chromosome 11 open reading frame 86 [ Homo sapiens (human) ]

Gene ID: 254439, updated on 23-Nov-2021

Summary

Official Symbol
C11orf86provided by HGNC
Official Full Name
chromosome 11 open reading frame 86provided by HGNC
Primary source
HGNC:HGNC:34442
See related
Ensembl:ENSG00000173237
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 30.9), small intestine (RPKM 29.9) and 1 other tissue See more
Orthologs
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Genomic context

See C11orf86 in Genome Data Viewer
Location:
11q13.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (66975304..66977009)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (66742775..66744480)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene pyruvate carboxylase Neighboring gene microRNA 3163 Neighboring gene uncharacterized LOC105369355 Neighboring gene synaptotagmin 12 Neighboring gene microRNA 6860 Neighboring gene ras homolog family member D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
GeneReviews: Not available

General gene information

Homology

Clone Names

  • FLJ22675

General protein information

Preferred Names
uncharacterized protein C11orf86

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136485.3NP_001129957.1  uncharacterized protein C11orf86 isoform 2

    See identical proteins and their annotated locations for NP_001129957.1

    Status: VALIDATED

    Source sequence(s)
    AK026328, AP003176
    Consensus CDS
    CCDS44656.1
    UniProtKB/Swiss-Prot
    A6NJI1
    Related
    ENSP00000311479.4, ENST00000308963.4
    Conserved Domains (1) summary
    pfam15464
    Location:1114
    DUF4633; Domain of unknown function (DUF4633)
  2. NM_001353554.2NP_001340483.1  uncharacterized protein C11orf86 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK026328, AP003176, HY168701
    Related
    ENSP00000506734.1, ENST00000683896.1
    Conserved Domains (1) summary
    pfam15464
    Location:1115
    DUF4633; Domain of unknown function (DUF4633)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    66975304..66977009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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