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SLC41A1 solute carrier family 41 member 1 [ Homo sapiens (human) ]

Gene ID: 254428, updated on 7-Jun-2020

Summary

Official Symbol
SLC41A1provided by HGNC
Official Full Name
solute carrier family 41 member 1provided by HGNC
Primary source
HGNC:HGNC:19429
See related
Ensembl:ENSG00000133065 MIM:610801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MgtE
Expression
Broad expression in heart (RPKM 55.1), testis (RPKM 27.0) and 20 other tissues See more
Orthologs

Genomic context

See SLC41A1 in Genome Data Viewer
Location:
1q32.1
Exon count:
12
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (205789095..205813759, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (205758221..205782887, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371702 Neighboring gene RAB29, member RAS oncogene family Neighboring gene uncharacterized LOC107985250 Neighboring gene peptidase M20 domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 4160 Neighboring gene uncharacterized LOC284581

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
NHGRI GWA Catalog
Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.
NHGRI GWA Catalog
Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.
NHGRI GWA Catalog
Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.
NHGRI GWA Catalog
Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
divalent inorganic cation transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 
magnesium ion transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
magnesium:sodium antiporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
cellular magnesium ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to magnesium ion IGI
Inferred from Genetic Interaction
more info
PubMed 
cellular response to magnesium ion ISS
Inferred from Sequence or Structural Similarity
more info
 
divalent metal ion transport ISS
Inferred from Sequence or Structural Similarity
more info
 
magnesium ion transmembrane transport IDA
Inferred from Direct Assay
more info
PubMed 
magnesium ion transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
 
magnesium ion transport IDA
Inferred from Direct Assay
more info
PubMed 
magnesium ion transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
basolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane TAS
Traceable Author Statement
more info
 
protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
solute carrier family 41 member 1
Names
solute carrier family 41 (magnesium transporter), member 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173854.6NP_776253.3  solute carrier family 41 member 1

    See identical proteins and their annotated locations for NP_776253.3

    Status: VALIDATED

    Source sequence(s)
    AC119673, BC136303, BX641054, BX648979, DA496198, HY148928
    Consensus CDS
    CCDS30988.1
    UniProtKB/Swiss-Prot
    Q8IVJ1
    UniProtKB/TrEMBL
    B2RMP2
    Related
    ENSP00000356105.3, ENST00000367137.4
    Conserved Domains (1) summary
    pfam01769
    Location:139270
    MgtE; Divalent cation transporter

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    205789095..205813759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005245069.2XP_005245126.1  solute carrier family 41 member 1 isoform X1

    See identical proteins and their annotated locations for XP_005245126.1

    UniProtKB/Swiss-Prot
    Q8IVJ1
    UniProtKB/TrEMBL
    B2RMP2
    Conserved Domains (1) summary
    pfam01769
    Location:139270
    MgtE; Divalent cation transporter
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