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rhp51 RecA family recombinase Rhp51 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543580, updated on 9-Sep-2018

Summary

Gene symbol
rhp51
Gene description
RecA family recombinase Rhp51
Locus tag
SPAC644.14c
Gene type
protein coding
RNA name
RecA family recombinase Rhp51
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rad51

Genomic context

See rhp51 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2698110..2700283, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene putative Rab GTPase-binding protein Neighboring gene splicing factor Cdc5 Neighboring gene 60S acidic ribosomal protein P1 Neighboring gene putative RNA-binding protein Neighboring gene putative mitochondrial ribosomal protein subunit L9

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Homologous recombination, organism-specific biosystem (from KEGG)
    Homologous recombination, organism-specific biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
  • Homologous recombination, conserved biosystem (from KEGG)
    Homologous recombination, conserved biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the rhp51 gene: The rhp51 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, A.thaliana, rice, and frog.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
ATP binding IDA
Inferred from Direct Assay
more info
PubMed 
ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-dependent ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Swi5-Sfr1 complex binding IDA
Inferred from Direct Assay
more info
PubMed 
Swi5-Sfr1 complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein-DNA loading ATPase activity TAS
Traceable Author Statement
more info
PubMed 
recombinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
recombinase activity IDA
Inferred from Direct Assay
more info
PubMed 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
DNA recombinase assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin silencing at centromere IMP
Inferred from Mutant Phenotype
more info
PubMed 
chromosome organization involved in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
double-strand break repair involved in meiotic recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
double-strand break repair via homologous recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
interstrand cross-link repair IMP
Inferred from Mutant Phenotype
more info
PubMed 
mating type switching IGI
Inferred from Genetic Interaction
more info
PubMed 
mitotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic recombination IGI
Inferred from Genetic Interaction
more info
PubMed 
mitotic recombination-dependent replication fork processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of DNA strand resection involved in replication fork processing EXP
Inferred from Experiment
more info
PubMed 
reciprocal meiotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of DNA recombination at centromere IMP
Inferred from Mutant Phenotype
more info
PubMed 
strand invasion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
strand invasion IDA
Inferred from Direct Assay
more info
PubMed 
telomere maintenance IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
chromosome, centromeric region IDA
Inferred from Direct Assay
more info
PubMed 
condensed nuclear chromosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
condensed nuclear chromosome ISO
Inferred from Sequence Orthology
more info
 
nuclear chromatin NAS
Non-traceable Author Statement
more info
 
nuclear envelope HDA PubMed 
nucleus HDA PubMed 
site of double-strand break IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
RecA family recombinase Rhp51

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2698110..2700283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019312.2NP_593882.1  RecA family recombinase Rhp51 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593882.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P36601
    Conserved Domains (3) summary
    cd01123
    Location:124356
    Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    TIGR02239
    Location:47360
    recomb_RAD51; DNA repair protein RAD51
    pfam14520
    Location:53102
    HHH_5; Helix-hairpin-helix domain
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