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chl1 putative ATP-dependent DNA helicase Chl1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543118, updated on 2-Oct-2018

Summary

Gene symbol
chl1
Gene description
putative ATP-dependent DNA helicase Chl1
Locus tag
SPAC3G6.11
Gene type
protein coding
RNA name
putative ATP-dependent DNA helicase Chl1
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces

Genomic context

See chl1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (5398679..5402410)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene putative sulfhydryl oxidase Neighboring gene putative trehalose-phosphate synthase Tps2 Neighboring gene miscRNA Neighboring gene putative GARP complex subunit Vps51 Neighboring gene miscRNA Neighboring gene 60S ribosomal protein L41 Neighboring gene SNF2 family helicase Ino80 Neighboring gene histone lysine methyltransferase Set2

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the chl1 gene: The chl1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, A.thaliana, and frog.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent DNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP-dependent DNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA duplex unwinding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-dependent DNA replication maintenance of fidelity IGI
Inferred from Genetic Interaction
more info
PubMed 
establishment of sister chromatid cohesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
interstrand cross-link repair ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol HDA PubMed 
nuclear chromatin IC
Inferred by Curator
more info
 
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
site of double-strand break IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
putative ATP-dependent DNA helicase Chl1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5398679..5402410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020408.2NP_594977.1  putative ATP-dependent DNA helicase Chl1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594977.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14147
    Conserved Domains (3) summary
    smart00488
    Location:11407
    DEXDc2; DEAD-like helicases superfamily
    TIGR00604
    Location:131833
    rad3; DNA repair helicase (rad3)
    pfam13307
    Location:636819
    Helicase_C_2; Helicase C-terminal domain
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