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snu66 U4/U5/U6 small nuclear ribonucleoprotein complex subunit Snu66 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542774, updated on 18-Sep-2024

Summary

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Official Symbol
snu66
Official Full Name
U4/U5/U6 small nuclear ribonucleoprotein complex subunit Snu66
Primary source
PomBase:SPAC167.03c
Locus tag
SPOM_SPAC167.03C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See snu66 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1554999..1557929)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ubiquitin-protein ligase E3 Neighboring gene protein mug143 Neighboring gene protein Dbs2 Neighboring gene putative TIM23 translocase complex-associated motor subunit Pam17 Neighboring gene geranylgeranyltransferase type 2 beta subunit Ptb1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GPI-mannosyltransferase II complex subunit Pga1 Neighboring gene serine/threonine protein kinase Ppk4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hub1 is an essential ubiquitin-like protein without functioning as a typical modifier in fission yeast. Yashiroda H, et al. Genes Cells, 2004 Dec. PMID 15569151
  2. Ubiquitin-like protein Hub1 is required for pre-mRNA splicing and localization of an essential splicing factor in fission yeast. Wilkinson CR, et al. Curr Biol, 2004 Dec 29. PMID 15620657
  3. Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex. Carnahan RH, et al. Eukaryot Cell, 2005 Mar. PMID 15755920, Free PMC Article
  4. Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing. Mishra SK, et al. Nature, 2011 May 25. PMID 21614000, Free PMC Article
  5. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome EXP
Inferred from Experiment
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in maturation of 5S rRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U4/U6 x U5 tri-snRNP complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of spliceosomal complex IC
Inferred by Curator
more info
  

General protein information

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Preferred Names
U4/U5/U6 small nuclear ribonucleoprotein complex subunit Snu66

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1554999..1557929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018814.3 → NP_593382.1  U4/U5/U6 small nuclear ribonucleoprotein complex subunit Snu66 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593382.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94538
    Conserved Domains (1) summary
    pfam03343
    Location:10 → 639
    SART-1; SART-1 family
Nucleotide Protein
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