Format

Send to:

Choose Destination

uga1 4-aminobutyrate aminotransferase (GABA transaminase) [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542494, updated on 5-Aug-2018

Summary

Gene symbol
uga1
Gene description
4-aminobutyrate aminotransferase (GABA transaminase)
Locus tag
SPAC19D5.07
Gene type
protein coding
RNA name
4-aminobutyrate aminotransferase (GABA transaminase)
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces

Genomic context

See uga1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5222447..5224795)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Dhp1p-interacting protein Din1 Neighboring gene hypothetical protein Neighboring gene miscRNA Neighboring gene Smc5-6 complex SMC subunit Smc5 Neighboring gene miscRNA Neighboring gene DASH complex subunit Dad3

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the uga1 gene: The uga1 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, and frog.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
4-aminobutyrate transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
4-aminobutyrate transaminase activity IDA
Inferred from Direct Assay
more info
PubMed 
4-aminobutyrate:2-oxoglutarate transaminase activity IEA
Inferred from Electronic Annotation
more info
 
pyridoxal phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pyridoxal phosphate binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
gamma-aminobutyric acid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
gamma-aminobutyric acid catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
glutamate metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
nitrogen utilization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol HDA PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
4-aminobutyrate aminotransferase (GABA transaminase)
NP_594905.1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5222447..5224795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020336.2NP_594905.1  4-aminobutyrate aminotransferase (GABA transaminase) [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594905.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13837
    Conserved Domains (2) summary
    TIGR00699
    Location:11474
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
    COG0160
    Location:12474
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
Support Center