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cka1 serine/threonine protein kinase Cka1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541972, updated on 6-Oct-2019

Summary

Gene symbol
cka1
Gene description
serine/threonine protein kinase Cka1
Primary source
PomBase:SPAC23C11.11
Locus tag
SPAC23C11.11
Gene type
protein coding
RNA name
serine/threonine protein kinase Cka1
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
orb5

Genomic context

See cka1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (2152042..2154223)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene putative alanine--tRNA (Ala) ligase Ala1 Neighboring gene hypothetical protein Neighboring gene miscRNA Neighboring gene anaphase-promoting complex subunit Hcn1 Neighboring gene putative xanthine phosphoribosyltransferase

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the cka1 gene: The cka1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, A.thaliana, and frog.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
ATP binding ISM
Inferred from Sequence Model
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
protein serine/threonine kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
cellular response to DNA damage stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
establishment or maintenance of cell polarity regulating cell shape IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-threonine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase I IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
signaling NAS
Non-traceable Author Statement
more info
 
Component Evidence Code Pubs
TORC1 complex IPI
Inferred from Physical Interaction
more info
PubMed 
TORC2 complex IPI
Inferred from Physical Interaction
more info
PubMed 
UTP-C complex ISO
Inferred from Sequence Orthology
more info
 
cytosol HDA PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear chromatin IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus HDA PubMed 
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase CK2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase CK2 complex IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
serine/threonine protein kinase Cka1
NP_593642.1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2152042..2154223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019073.2NP_593642.1  serine/threonine protein kinase Cka1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593642.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P40231
    Conserved Domains (2) summary
    smart00220
    Location:43328
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14132
    Location:24329
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
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