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syb1 synaptobrevin family receptor [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541731, updated on 6-May-2021

Summary

Gene symbol
syb1
Gene description
synaptobrevin family receptor
Primary source
PomBase:SPAC6G9.11
Locus tag
SPAC6G9.11
Gene type
protein coding
RNA name
synaptobrevin family receptor
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

See syb1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (3267461..3269670)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ARP2/3 actin-organizing complex subunit Arc4 Neighboring gene ubiquitin hydrolase Ubp6 Neighboring gene 60S ribosomal protein L24 Neighboring gene helicase Sen1 Neighboring gene CHS5-like protein Cfr1 Neighboring gene miscRNA Neighboring gene bouquet formation protein Bqt1 Neighboring gene putative RNA-binding protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables SNAP receptor activity ISM
Inferred from Sequence Model
more info
 
enables syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in ascospore-type prospore membrane formation IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in intracellular protein transport NAS
Non-traceable Author Statement
more info
 
involved_in vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in Golgi apparatus HDA PubMed 
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cell cortex of cell tip IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cell division site IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cell tip IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm HDA PubMed 
is_active_in endosome IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in medial cortex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in meiotic spindle pole IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
synaptobrevin family receptor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3267461..3269670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019544.2NP_594120.1  synaptobrevin family receptor [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594120.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q92356
    Conserved Domains (2) summary
    COG5143
    Location:296
    SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
    cd15874
    Location:3089
    R-SNARE_Snc1; SNARE motif of Snc1
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