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lsk1 P-TEFb-associated cyclin-dependent protein kinase Lsk1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541672, updated on 12-Aug-2018

Summary

Gene symbol
lsk1
Gene description
P-TEFb-associated cyclin-dependent protein kinase Lsk1
Locus tag
SPAC2F3.15
Gene type
protein coding
RNA name
P-TEFb-associated cyclin-dependent protein kinase Lsk1
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces

Genomic context

See lsk1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (3953832..3956869)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene splicing-associated factor Saf2 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative ubiquitin-protein ligase E3 Neighboring gene hypothetical protein

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II CTD heptapeptide repeat kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II CTD heptapeptide repeat kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II CTD heptapeptide repeat kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
cyclin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein serine/threonine kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
CTDK-1 complex IPI
Inferred from Physical Interaction
more info
PubMed 
chromosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin/CDK positive transcription elongation factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear chromatin IDA
Inferred from Direct Assay
more info
PubMed 
nuclear cyclin-dependent protein kinase holoenzyme complex IPI
Inferred from Physical Interaction
more info
PubMed 
nucleolus HDA PubMed 
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
P-TEFb-associated cyclin-dependent protein kinase Lsk1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3953832..3956869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019816.2NP_594393.1  P-TEFb-associated cyclin-dependent protein kinase Lsk1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594393.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14098
    Conserved Domains (2) summary
    smart00220
    Location:277561
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd07840
    Location:277561
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
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