Format

Send to:

Choose Destination

arp42 SWI/SNF and RSC complex subunit Arp42 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541496, updated on 22-Aug-2021

Summary

Gene symbol
arp42
Gene description
SWI/SNF and RSC complex subunit Arp42
Primary source
PomBase:SPAC23D3.09
Locus tag
SPAC23D3.09
Gene type
protein coding
RNA name
SWI/SNF and RSC complex subunit Arp42
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
arp4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See arp42 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (4352333..4355333, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene nucleoporin Nup146 Neighboring gene putative proteasome core particle subunit beta 2 Neighboring gene U1 snRNP-associated protein Usp108 Neighboring gene endo-1,3-beta-glucanase Eng2 Neighboring gene miscRNA Neighboring gene putative 1-acyldihydroxyacetone phosphate reductase Neighboring gene miscRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the arp42 gene: The arp42 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, and N.crassa.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
involved_in histone H4 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of Ino80 complex ISO
Inferred from Sequence Orthology
more info
 
part_of NuA4 histone acetyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of NuA4 histone acetyltransferase complex ISO
Inferred from Sequence Orthology
more info
 
part_of RSC-type complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of SWI/SNF complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

Preferred Names
SWI/SNF and RSC complex subunit Arp42

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4352333..4355333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019975.2NP_594546.2  SWI/SNF and RSC complex subunit Arp42 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594546.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09849
    Conserved Domains (2) summary
    COG5277
    Location:1421
    COG5277; Actin-related protein [Cytoskeleton]
    pfam00022
    Location:4424
    Actin; Actin
Support Center