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arp42 SWI/SNF and RSC complex subunit Arp42 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541496, updated on 8-Dec-2022

Summary

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Gene symbol
arp42
Gene description
SWI/SNF and RSC complex subunit Arp42
Primary source
PomBase:SPAC23D3.09
Locus tag
SPAC23D3.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
arp4
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Genomic context

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See arp42 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (4352333..4355333, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene nucleoporin Nup146 Neighboring gene putative proteasome core particle subunit beta 2 Neighboring gene U1 snRNP-associated protein Usp108 Neighboring gene endo-1,3-beta-glucanase Eng2 Neighboring gene miscRNA Neighboring gene putative 1-acyldihydroxyacetone phosphate reductase Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast. Koch A, et al. Sci Signal, 2011 Jun 28. PMID 21712547
  2. Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Monahan BJ, et al. Nat Struct Mol Biol, 2008 Aug. PMID 18622392, Free PMC Article
  3. Widespread cotranslational formation of protein complexes. Duncan CD, et al. PLoS Genet, 2011 Dec. PMID 22144913, Free PMC Article
  4. Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex. Weigt M, et al. Epigenetics Chromatin, 2021 Jan 19. PMID 33468217, Free PMC Article
  5. Fitness profiling links topoisomerase II regulation of centromeric integrity to doxorubicin resistance in fission yeast. Nguyen TT, et al. Sci Rep, 2015 Feb 11. PMID 25669599, Free PMC Article

See all (17) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

  • Homologs of the arp42 gene: The arp42 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, and N.crassa.
  • Orthologs

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling ISO
Inferred from Sequence Orthology
more info
  
involved_in double-strand break repair via nonhomologous end joining NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in histone H4 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in positive regulation of double-strand break repair via homologous recombination NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex ISO
Inferred from Sequence Orthology
more info
  
part_of NuA4 histone acetyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
part_of NuA4 histone acetyltransferase complex ISO
Inferred from Sequence Orthology
more info
  
part_of RSC-type complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RSC-type complex IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of SWI/SNF complex IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of SWI/SNF complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
SWI/SNF and RSC complex subunit Arp42

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4352333..4355333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019975.2 → NP_594546.2  SWI/SNF and RSC complex subunit Arp42 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594546.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09849
    Conserved Domains (2) summary
    COG5277
    Location:1 → 421
    COG5277; Actin-related protein [Cytoskeleton]
    pfam00022
    Location:4 → 424
    Actin; Actin
Nucleotide Protein
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