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egd2 nascent polypeptide-associated complex alpha subunit Egd2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540432, updated on 5-Aug-2018

Summary

Gene symbol
egd2
Gene description
nascent polypeptide-associated complex alpha subunit Egd2
Locus tag
SPBC25H2.05
Gene type
protein coding
RNA name
nascent polypeptide-associated complex alpha subunit Egd2
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
nac1

Genomic context

See egd2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3274928..3275541, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative magnesium ion transporter Mrs2 Neighboring gene translation initiation factor eIF1A Neighboring gene putative COPII-coated vesicle-associated protein Hrf1 Neighboring gene putative phosphatidylinositol synthesis protein Neighboring gene putative TIM22 inner membrane protein import complex subunit Tim22 Neighboring gene putative threonine--tRNA (Thr) ligase Trs1

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the egd2 gene: The egd2 gene is conserved in chimpanzee, dog, cow, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, and A.thaliana.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
NOT ubiquitin binding IDA
Inferred from Direct Assay
more info
PubMed 
unfolded protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
'de novo' cotranslational protein folding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol HDA PubMed 
nascent polypeptide-associated complex ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
nascent polypeptide-associated complex alpha subunit Egd2

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3274928..3275541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022282.2NP_596361.1  nascent polypeptide-associated complex alpha subunit Egd2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596361.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87147
    Conserved Domains (3) summary
    COG1308
    Location:22173
    EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
    cd14358
    Location:136172
    UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
    pfam01849
    Location:2678
    NAC; NAC domain
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