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rap1 telomere-binding protein Rap1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540115, updated on 20-May-2024

Summary

Gene symbol
rap1
Gene description
telomere-binding protein Rap1
Primary source
FungiDB:SPBC1778.02
Locus tag
SPBC1778.02
See related
VEuPathDB:SPBC1778.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

See rap1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (3098295..3100698)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative zuotin Neighboring gene 8S ribosomal RNA (predicted) Neighboring gene putative NADH pyrophosphatase Neighboring gene uncharacterized protein Neighboring gene Spo4-Spo6 kinase complex regulatory subunit Spo6 Neighboring gene fimbrin

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables telomeric DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in chromosome, telomeric repeat region IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in meiotic spindle pole body IDA
Inferred from Direct Assay
more info
PubMed 
part_of nuclear telomere cap complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus leading edge IDA
Inferred from Direct Assay
more info
PubMed 
part_of shelterin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of shelterin complex IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
telomere-binding protein Rap1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3098295..3100698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022207.2NP_596285.1  telomere-binding protein Rap1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596285.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q96TL7, Q9UTW1, Q9UU15
    Conserved Domains (4) summary
    cd11655
    Location:122170
    rap1_myb-like; DNA-binding modules of yeast Rap1 and related proteins
    cd11670
    Location:645693
    Sp_RAP1_RCT; C-terminal domain of S. pombe RAP1 protein
    pfam09197
    Location:494603
    Rap1-DNA-bind; Rap1, DNA-binding
    pfam16589
    Location:1103
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain