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trs20 putative TRAPP complex subunit Trs20 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539833, updated on 13-Mar-2024

Summary

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Gene symbol
trs20
Gene description
putative TRAPP complex subunit Trs20
Primary source
PomBase:SPBC11G11.04
Locus tag
SPBC11G11.04
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003423.3 (1762436..1763290)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative protein Fis1 Neighboring gene putative actin cortical patch component End3 Neighboring gene putative mRNA turnover and ribosome assembly protein Mrt4 Neighboring gene Sm snRNP core protein Sme1 Neighboring gene putative DNA-directed RNA polymerase I complex subunit Rpa34 Neighboring gene putative karyopherin Mtr10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intra-Golgi vesicle-mediated transport IC
Inferred by Curator
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
involved_in macroautophagy IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPPI protein complex ISO
Inferred from Sequence Orthology
more info
  
part_of TRAPPII protein complex ISO
Inferred from Sequence Orthology
more info
  
part_of TRAPPIII protein complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in cis-Golgi network IC
Inferred by Curator
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative TRAPP complex subunit Trs20

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1762436..1763290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021620.2 → NP_595722.1  putative TRAPP complex subunit Trs20 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595722.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9USZ5
    Conserved Domains (1) summary
    COG5603
    Location:1 → 136
    TRS20; Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Nucleotide Protein
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