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rnc1 RNA-binding protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539434, updated on 11-Apr-2024

Summary

Gene symbol
rnc1
Gene description
RNA-binding protein
Primary source
PomBase:SPCC757.09c
Locus tag
SPCC757.09c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (64099..66685, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene catalase Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene putative exosome subunit Rrp45 Neighboring gene putative transporter Neighboring gene putative V-ATPase assembly protein Neighboring gene tRNA-His

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA 3'-UTR binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables mRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cytosol HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    64099..66685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022679.2NP_587684.1  RNA-binding protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587684.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74919
    Conserved Domains (2) summary
    cd00105
    Location:322385
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:181243
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...