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SPCC553.08c putative GTPase Ria1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539293, updated on 20-May-2024

Summary

Gene symbol
SPCC553.08c
Gene description
putative GTPase Ria1
Primary source
PomBase:SPCC553.08c
Locus tag
SPCC553.08c
See related
FungiDB:SPCC553.08c; VEuPathDB:SPCC553.08c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

See SPCC553.08c in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (289720..293230)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene DNA polymerase alpha B-subunit Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene DinB-like DNA repair polymerase kappa Neighboring gene putative oligosaccharyltransferase delta subunit Swp1 Neighboring gene wtf element Wtf6

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables GTP binding ISM
Inferred from Sequence Model
more info
 
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ribosome binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in cytosolic ribosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in ribosome biogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    289720..293230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022759.2NP_587766.1  putative GTPase Ria1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587766.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74945
    Conserved Domains (6) summary
    cd01885
    Location:20237
    EF2; Elongation Factor 2 (EF2) in archaea and eukarya
    cd01681
    Location:633868
    aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
    cd04096
    Location:865943
    eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
    PTZ00416
    Location:1985
    PTZ00416; elongation factor 2; Provisional
    cd16268
    Location:463547
    EF2_II; Domain II of Elongation Factor 2
    cd16261
    Location:562633
    EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)