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SPCC18.09c aprataxin-like protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539198, updated on 12-Aug-2018

Summary

Gene symbol
SPCC18.09c
Gene description
aprataxin-like protein
Locus tag
SPCC18.09c
Gene type
protein coding
RNA name
aprataxin-like protein
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces

Genomic context

See SPCC18.09c in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (1970754..1973851, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative DNA-directed RNA polymerase III complex subunit Rpc53 Neighboring gene putative lysine--tRNA (Lys) ligase Neighboring gene putative pyridoxine-pyridoxal-pyridoxamine kinase Neighboring gene Dpy-30 domain protein Sdc1 Neighboring gene miscRNA Neighboring gene putative rRNA processing protein Utp23

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
DNA 5'-adenosine monophosphate hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA 5'-adenosine monophosphate hydrolase activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-3'-diphospho-5'-guanosine diphosphatase IDA
Inferred from Direct Assay
more info
PubMed 
GMP binding IDA
Inferred from Direct Assay
more info
PubMed 
double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
double-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
guanosine binding IDA
Inferred from Direct Assay
more info
PubMed 
mismatched DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mismatched DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
single-strand break-containing DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single-strand break-containing DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
double-strand break repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mismatch repair IDA
Inferred from Direct Assay
more info
PubMed 
single strand break repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol HDA PubMed 
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1970754..1973851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023379.2NP_588388.1  aprataxin-like protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588388.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74859
    Conserved Domains (2) summary
    pfam01230
    Location:45156
    HIT; HIT domain
    pfam16278
    Location:172224
    zf-C2HE; C2HE / C2H2 / C2HC zinc-binding finger
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