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Actg2 actin gamma 2, smooth muscle [ Rattus norvegicus (Norway rat) ]

Gene ID: 25365, updated on 18-Apr-2019

Summary

Official Symbol
Actg2provided by RGD
Official Full Name
actin gamma 2, smooth muscleprovided by RGD
Primary source
RGD:2027
See related
Ensembl:ENSRNOG00000029401
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
SMGA; ACTGE
Summary
may play a role in smooth muscle function [RGD, Feb 2006]
Expression
Biased expression in Uterus (RPKM 1423.3) and Lung (RPKM 170.0) See more
Orthologs

Genomic context

See Actg2 in Genome Data Viewer
Location:
4q34
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (115215160..115239746, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (179805782..179830362, complement)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene tet methylcytosine dioxygenase 3 Neighboring gene uncharacterized LOC102548361 Neighboring gene deoxyguanosine kinase Neighboring gene Stam binding protein Neighboring gene C-type lectin domain family 4, member F

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC105507

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
mesenchyme migration ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cell body ISS
Inferred from Sequence or Structural Similarity
more info
 
cell periphery IEA
Inferred from Electronic Annotation
more info
 
cell periphery ISO
Inferred from Sequence Orthology
more info
PubMed 
cellular_component ND
No biological Data available
more info
 
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
filopodium ISS
Inferred from Sequence or Structural Similarity
more info
 
lamellipodium ISS
Inferred from Sequence or Structural Similarity
more info
 
myosin filament ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
actin, gamma-enteric smooth muscle
Names
actin, gamma 2, smooth muscle, enteric
alpha-actin-3
alpha-smooth muscle actin
gamma-2-actin
gamma-enteric smooth muscle actin
smooth muscle gamma-actin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_012893.1NP_037025.1  actin, gamma-enteric smooth muscle

    See identical proteins and their annotated locations for NP_037025.1

    Status: PROVISIONAL

    Source sequence(s)
    M22323
    UniProtKB/Swiss-Prot
    P63269
    Conserved Domains (1) summary
    PTZ00281
    Location:1376
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    115215160..115239746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236728.2XP_006236790.1  actin, gamma-enteric smooth muscle isoform X1

    See identical proteins and their annotated locations for XP_006236790.1

    UniProtKB/Swiss-Prot
    P63269
    Related
    ENSRNOP00000050322.2, ENSRNOT00000042699.4
    Conserved Domains (1) summary
    PTZ00281
    Location:1376
    PTZ00281; actin; Provisional

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    105015569..105030100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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