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Cebpg CCAAT/enhancer binding protein gamma [ Rattus norvegicus (Norway rat) ]

Gene ID: 25301, updated on 3-Jun-2018
Official Symbol
Cebpgprovided by RGD
Official Full Name
CCAAT/enhancer binding protein gammaprovided by RGD
Primary source
RGD:2330
See related
Ensembl:ENSRNOG00000021144
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
C/EBP; CEBPRNA
Summary
binds to the promoter and enhancer of the alpha 1-fetoprotein gene; may regulate alpha 1-fetoprotein transcription [RGD, Feb 2006]
Expression
Biased expression in Thymus (RPKM 195.6), Liver (RPKM 176.7) and 9 other tissues See more
Orthologs
See Cebpg in Genome Data Viewer
Location:
1q21
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (91286956..91297459, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (92417890..92442666, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene peptidase D Neighboring gene zinc finger protein 507-like Neighboring gene programmed cell death 5 Neighboring gene uncharacterized LOC102555648 Neighboring gene CCAAT/enhancer binding protein alpha

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Tuberculosis, organism-specific biosystem (from KEGG)
    Tuberculosis, organism-specific biosystemTuberculosis, or TB, is an infectious disease caused by Mycobacterium tuberculosis. One third of the world's population is thought to be infected with TB. About 90% of those infected result in latent...
  • Tuberculosis, conserved biosystem (from KEGG)
    Tuberculosis, conserved biosystemTuberculosis, or TB, is an infectious disease caused by Mycobacterium tuberculosis. One third of the world's population is thought to be infected with TB. About 90% of those infected result in latent...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
NOT DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding, bending IDA
Inferred from Direct Assay
more info
PubMed 
double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein heterodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
protein heterodimerization activity ISO
Inferred from Sequence Orthology
more info
 
protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
B cell differentiation ISO
Inferred from Sequence Orthology
more info
 
B cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
enucleate erythrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
enucleate erythrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
immune response ISO
Inferred from Sequence Orthology
more info
 
immune response ISS
Inferred from Sequence or Structural Similarity
more info
 
liver development IEP
Inferred from Expression Pattern
more info
PubMed 
mRNA metabolic process IEA
Inferred from Electronic Annotation
more info
 
mRNA metabolic process ISO
Inferred from Sequence Orthology
more info
 
natural killer cell mediated cytotoxicity ISO
Inferred from Sequence Orthology
more info
 
natural killer cell mediated cytotoxicity ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
negative regulation of DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
positive regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
 
positive regulation of DNA repair ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
positive regulation of interferon-gamma biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interferon-gamma biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription by RNA polymerase II IEP
Inferred from Expression Pattern
more info
PubMed 
regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
NOT regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Preferred Names
CCAAT/enhancer-binding protein gamma
Names
CCAAT/enhancer binding protein (C/EBP), gamma
c/EBP gamma
homolog to a human CCAAT/enhancer binding protein - gamma

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_012831.1NP_036963.1  CCAAT/enhancer-binding protein gamma

    See identical proteins and their annotated locations for NP_036963.1

    Status: PROVISIONAL

    Source sequence(s)
    X64403
    UniProtKB/Swiss-Prot
    P26801
    UniProtKB/TrEMBL
    B2GVA2
    Related
    ENSRNOP00000028703.4, ENSRNOT00000028703.5
    Conserved Domains (1) summary
    cd14713
    Location:60120
    bZIP_CEBPG; Basic leucine zipper (bZIP) domain of CCAAT/enhancer-binding protein gamma (CEBPG): a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    91286956..91297459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759112.2XP_008757334.1  CCAAT/enhancer-binding protein gamma isoform X1

    Conserved Domains (1) summary
    cd14713
    Location:226286
    bZIP_CEBPG; Basic leucine zipper (bZIP) domain of CCAAT/enhancer-binding protein gamma (CEBPG): a DNA-binding and dimerization domain

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    82038947..82045699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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