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TXLNGY taxilin gamma pseudogene, Y-linked [ Homo sapiens (human) ]

Gene ID: 246126, updated on 11-Jun-2021

Summary

Official Symbol
TXLNGYprovided by HGNC
Official Full Name
taxilin gamma pseudogene, Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:18473
See related
Ensembl:ENSG00000131002 MIM:400031
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TXLNG2P; CYorf15A; CYorf15B
Expression
Broad expression in prostate (RPKM 7.9), small intestine (RPKM 4.8) and 18 other tissues See more
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Genomic context

See TXLNGY in Genome Data Viewer
Location:
Yq11.222-q11.223
Exon count:
11
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (19567358..19607170)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21729244..21769056)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene BCL-6 corepressor pseudogene Neighboring gene BCL6 corepressor pseudogene 1 Neighboring gene uncharacterized LOC105377223 Neighboring gene uncharacterized LOC105377224 Neighboring gene lysine demethylase 5D Neighboring gene regulator of chromosome condensation 2 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • lipopolysaccaride-specific response 5-like protein
  • taxilin gamma 2, pseudogene

Clone Names

  • FLJ33216, MGC21662, MGC131732, DKFZp451G0616

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045128.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and spans the full extent of this pseudogene. There are no full-length transcripts representing this exon combination; it is predicted based on partial transcript alignments and on full-length alignments from the functional gene, GeneID:55787.
    Source sequence(s)
    AC009977, AC010889, AI828041, BM263181, CD242693, FY211499
  2. NR_045129.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several 3' exons but contains an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AI129169, BM263181
    Related
    ENST00000447520.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    19567358..19607170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005852.2: Suppressed sequence

    Description
    NM_001005852.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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