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id3 inhibitor of DNA binding 3 [ Danio rerio (zebrafish) ]

Gene ID: 246093, updated on 3-Oct-2019

Summary

Official Symbol
id3provided by ZNC
Official Full Name
inhibitor of DNA binding 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-020515-1
See related
Ensembl:ENSDARG00000054823
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fa56g03; tdsubc_2g3; wu:fa56g03; ik:tdsubc_2g3; xx:tdsubc_2g3

Genomic context

See id3 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (27271399..27273303, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (27253008..27254912, complement)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (27113089..27114993, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 Neighboring gene si:ch211-160f23.5 Neighboring gene si:ch1073-358c10.1 Neighboring gene microRNA 124-4

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

  • Adipogenesis, organism-specific biosystem (from WikiPathways)
    Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...
  • BMP signaling pathway, organism-specific biosystem (from WikiPathways)
    BMP signaling pathway, organism-specific biosystem
    BMP signaling pathway
  • Id Signaling Pathway, organism-specific biosystem (from WikiPathways)
    Id Signaling Pathway, organism-specific biosystemInhibitor of DNA binding (ID) proteins are members of the helix-loop-helix (HLH) family of proteins which lack a DNA binding domain themselves but bind to other family members inhibiting their DNA bi...
  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dopaminergic neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-binding protein inhibitor ID-3
Names
Id2d
etID138038.17

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152967.1NP_694499.1  DNA-binding protein inhibitor ID-3

    See identical proteins and their annotated locations for NP_694499.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065841
    UniProtKB/TrEMBL
    Q8QFX4
    Related
    ENSDARP00000071555.4, ENSDART00000077087.5
    Conserved Domains (1) summary
    pfam00010
    Location:4179
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    27271399..27273303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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