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Zbtb38 zinc finger and BTB domain containing 38 [ Mus musculus (house mouse) ]

Gene ID: 245007, updated on 9-Mar-2023

Summary

Official Symbol
Zbtb38provided by MGI
Official Full Name
zinc finger and BTB domain containing 38provided by MGI
Primary source
MGI:MGI:2442866
See related
Ensembl:ENSMUSG00000040433 AllianceGenome:MGI:2442866
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CIBZ; A930014K01Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; protein homodimerization activity; and sequence-specific DNA binding activity. Predicted to be involved in cellular response to DNA damage stimulus and regulation of cellular macromolecule biosynthetic process. Predicted to be located in nucleoplasm. Is expressed in genitourinary system. Orthologous to human ZBTB38 (zinc finger and BTB domain containing 38). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 2.7), ovary adult (RPKM 2.1) and 27 other tissues See more
Orthologs
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Genomic context

See Zbtb38 in Genome Data Viewer
Location:
9; 9 E3.3
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (96564820..96613728, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (96682767..96731675, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene ubiquitin domain containing 2 pseudogene Neighboring gene RAS p21 protein activator 2 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene RIKEN cDNA E030011O05 gene Neighboring gene RIKEN cDNA C430002N11 gene Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables methyl-CpG binding ISO
Inferred from Sequence Orthology
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA replication ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
zinc finger and BTB domain-containing protein 38
Names
CtBP-interacting BTB zinc finger protein
Zenon homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359959.1NP_001346888.1  zinc finger and BTB domain-containing protein 38

    Status: VALIDATED

    Source sequence(s)
    AC121951, AK054096
    Consensus CDS
    CCDS40731.1
    UniProtKB/TrEMBL
    Q3LR78
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon
  2. NM_001359960.1NP_001346889.1  zinc finger and BTB domain-containing protein 38

    Status: VALIDATED

    Source sequence(s)
    AC121951, AK054529
    Consensus CDS
    CCDS40731.1
    UniProtKB/TrEMBL
    Q3LR78
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon
  3. NM_175537.3NP_780746.2  zinc finger and BTB domain-containing protein 38

    See identical proteins and their annotated locations for NP_780746.2

    Status: VALIDATED

    Source sequence(s)
    AC121951
    Consensus CDS
    CCDS40731.1
    UniProtKB/TrEMBL
    Q3LR78
    Related
    ENSMUSP00000091315.3, ENSMUST00000093798.9
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    96564820..96613728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511191.5XP_006511254.1  zinc finger and BTB domain-containing protein 38 isoform X3

    See identical proteins and their annotated locations for XP_006511254.1

    UniProtKB/TrEMBL
    Q3LR78
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon
  2. XM_036155015.1XP_036010908.1  zinc finger and BTB domain-containing protein 38 isoform X3

    UniProtKB/TrEMBL
    Q3LR78
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon
  3. XM_006511189.5XP_006511252.1  zinc finger and BTB domain-containing protein 38 isoform X2

    Conserved Domains (6) summary
    sd00017
    Location:10291049
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10551077
    zf-C2H2; Zinc finger, C2H2 type
    cd18223
    Location:29142
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam09507
    Location:725955
    CDC27; DNA polymerase subunit Cdc27
    pfam13465
    Location:10421065
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:353414
    zf-C2H2_8; C2H2-type zinc ribbon
  4. XM_006511193.5XP_006511256.1  zinc finger and BTB domain-containing protein 38 isoform X3

    See identical proteins and their annotated locations for XP_006511256.1

    UniProtKB/TrEMBL
    Q3LR78
    Conserved Domains (5) summary
    sd00017
    Location:10151035
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:15128
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10411063
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10281051
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:340400
    zf-C2H2_8; C2H2-type zinc ribbon
  5. XM_036155014.1XP_036010907.1  zinc finger and BTB domain-containing protein 38 isoform X1

    Conserved Domains (5) summary
    sd00017
    Location:10611081
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18223
    Location:61174
    BTB_POZ_ZBTB38_CIBZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 38 (ZBTB38)
    pfam00096
    Location:10871109
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:10741097
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:386446
    zf-C2H2_8; C2H2-type zinc ribbon