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Dpy19l1 dpy-19-like 1 (C. elegans) [ Mus musculus (house mouse) ]

Gene ID: 244745, updated on 14-Aug-2019

Summary

Official Symbol
Dpy19l1provided by MGI
Official Full Name
dpy-19-like 1 (C. elegans)provided by MGI
Primary source
MGI:MGI:1915685
See related
Ensembl:ENSMUSG00000043067
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI225861; AW558481; 6030402K12; 1100001I19Rik
Expression
Ubiquitous expression in CNS E14 (RPKM 16.6), cortex adult (RPKM 15.2) and 28 other tissues See more
Orthologs

Genomic context

See Dpy19l1 in Genome Data Viewer
Location:
9; 9 A4
Exon count:
23
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (24411778..24503140, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (24216222..24307584, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene neuropeptide S receptor 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC115487153 Neighboring gene dpy-19-like 2 (C. elegans) Neighboring gene cysteine-rich perinuclear theca 4 Neighboring gene T-box 20

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity, transferring glycosyl groups IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
probable C-mannosyltransferase DPY19L1
Names
dpy-19-like protein 1
protein dpy-19 homolog 1
NP_001346877.1
NP_766508.3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359948.1NP_001346877.1  probable C-mannosyltransferase DPY19L1

    Status: VALIDATED

    Source sequence(s)
    AC102554, BU757480, CT010514
    Related
    ENSMUSP00000119986.1, ENSMUST00000142064.7
    Conserved Domains (2) summary
    pfam10034
    Location:105742
    Dpy19; Q-cell neuroblast polarisation
    cl28033
    Location:1191
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  2. NM_172920.4NP_766508.3  probable C-mannosyltransferase DPY19L1

    See identical proteins and their annotated locations for NP_766508.3

    Status: VALIDATED

    Source sequence(s)
    AK143845, BU757480, CD352443, CT010514
    Consensus CDS
    CCDS22931.2
    UniProtKB/Swiss-Prot
    A6X919
    Related
    ENSMUSP00000129575.1, ENSMUST00000170356.1
    Conserved Domains (2) summary
    pfam10034
    Location:105742
    Dpy19; Q-cell neuroblast polarisation
    cl28033
    Location:1191
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p6 C57BL/6J

    Range
    24411778..24503140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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