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Wdr17 WD repeat domain 17 [ Mus musculus (house mouse) ]

Gene ID: 244484, updated on 6-Jun-2024

Summary

Official Symbol
Wdr17provided by MGI
Official Full Name
WD repeat domain 17provided by MGI
Primary source
MGI:MGI:1924662
See related
Ensembl:ENSMUSG00000039375 AllianceGenome:MGI:1924662
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3010002I12Rik; B230207L18Rik
Summary
Is expressed in brain; eye; olfactory epithelium; and spinal cord. Orthologous to human WDR17 (WD repeat domain 17). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 3.3), cortex adult (RPKM 3.0) and 6 other tissues See more
Orthologs
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Genomic context

See Wdr17 in Genome Data Viewer
Location:
8 B1.3; 8 29.28 cM
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (55082316..55180014, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (54629281..54726979, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_21499 Neighboring gene predicted gene, 46039 Neighboring gene spermatogenesis associated 4 Neighboring gene STARR-seq mESC enhancer starr_21500 Neighboring gene STARR-seq mESC enhancer starr_21502 Neighboring gene glycoprotein m6a Neighboring gene predicted gene, 53418 Neighboring gene predicted gene, 57523

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC40755

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
WD repeat-containing protein 17

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172152.2NP_001165623.1  WD repeat-containing protein 17 isoform 2

    See identical proteins and their annotated locations for NP_001165623.1

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    Consensus CDS
    CCDS52551.1
    UniProtKB/TrEMBL
    Q8C8Y2, Q8CFX0
    Related
    ENSMUSP00000122326.2, ENSMUST00000150488.8
    Conserved Domains (3) summary
    cd00200
    Location:367657
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:333367
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:51441
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. NM_001364215.2NP_001351144.1  WD repeat-containing protein 17 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:293583
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:259293
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:90405
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. NM_001372370.1NP_001359299.1  WD repeat-containing protein 17 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:75465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. NM_001372371.1NP_001359300.1  WD repeat-containing protein 17 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:75465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  5. NM_001372372.1NP_001359301.1  WD repeat-containing protein 17 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:75465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  6. NM_001372373.1NP_001359302.1  WD repeat-containing protein 17 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    Consensus CDS
    CCDS90399.1
    UniProtKB/TrEMBL
    H3BLI8, Q8CFX0
    Related
    ENSMUSP00000135805.2, ENSMUST00000175915.8
    Conserved Domains (3) summary
    cd00200
    Location:367657
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:333367
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:51441
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  7. NM_001372374.1NP_001359303.1  WD repeat-containing protein 17 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    COG2319
    Location:1241
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:188478
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:154188
    7WD40; WD40 repeat [structural motif]
  8. NM_001372375.1NP_001359304.1  WD repeat-containing protein 17 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:109399
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:75109
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:2183
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  9. NM_001372376.1NP_001359305.1  WD repeat-containing protein 17 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    Conserved Domains (2) summary
    cd00200
    Location:13303
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:1956
    7WD40; WD40 repeat [structural motif]
  10. NM_001428363.1NP_001415292.1  WD repeat-containing protein 17 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    UniProtKB/TrEMBL
    E9Q271
  11. NM_028220.4NP_082496.3  WD repeat-containing protein 17 isoform 1

    See identical proteins and their annotated locations for NP_082496.3

    Status: VALIDATED

    Source sequence(s)
    AC102933, AC109200
    Consensus CDS
    CCDS22309.2
    UniProtKB/TrEMBL
    G3UVU7, Q8CFX0
    Related
    ENSMUSP00000117710.3, ENSMUST00000144711.9
    Conserved Domains (4) summary
    COG2319
    Location:253665
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:374664
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:340374
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:74281
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    55082316..55180014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154031.1XP_036009924.1  WD repeat-containing protein 17 isoform X12

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:109399
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:75109
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:2183
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_006509431.4XP_006509494.1  WD repeat-containing protein 17 isoform X5

    See identical proteins and their annotated locations for XP_006509494.1

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:293583
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:259293
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:90405
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. XM_036154030.1XP_036009923.1  WD repeat-containing protein 17 isoform X11

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    smart00320
    Location:4988
    WD40; WD40 repeats
    cd00200
    Location:216445
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:208243
    7WD40; WD40 repeat [structural motif]
  4. XM_036154029.1XP_036009922.1  WD repeat-containing protein 17 isoform X9

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    COG2319
    Location:25295
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:242532
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:208242
    7WD40; WD40 repeat [structural motif]
  5. XM_030243543.2XP_030099403.1  WD repeat-containing protein 17 isoform X6

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:293583
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:259293
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:90405
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  6. XM_006509430.4XP_006509493.1  WD repeat-containing protein 17 isoform X5

    See identical proteins and their annotated locations for XP_006509493.1

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:293583
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:259293
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:90405
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  7. XM_036154028.1XP_036009921.1  WD repeat-containing protein 17 isoform X8

    Conserved Domains (3) summary
    COG2319
    Location:49319
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:266556
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:232266
    7WD40; WD40 repeat [structural motif]
  8. XM_006509432.3XP_006509495.1  WD repeat-containing protein 17 isoform X7

    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    COG2319
    Location:49319
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:266556
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:232266
    7WD40; WD40 repeat [structural motif]
  9. XM_006509429.4XP_006509492.1  WD repeat-containing protein 17 isoform X2

    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    COG2319
    Location:44429
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:376666
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:342376
    7WD40; WD40 repeat [structural motif]
  10. XM_036154025.1XP_036009918.1  WD repeat-containing protein 17 isoform X4

    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    cd00200
    Location:258594
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357392
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:74298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  11. XM_006509426.4XP_006509489.1  WD repeat-containing protein 17 isoform X1

    See identical proteins and their annotated locations for XP_006509489.1

    UniProtKB/TrEMBL
    E9Q271
    Related
    ENSMUSP00000115550.3, ENSMUST00000127511.9
    Conserved Domains (3) summary
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:75465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  12. XM_006509434.4XP_006509497.1  WD repeat-containing protein 17 isoform X13

    Conserved Domains (2) summary
    cd00200
    Location:13303
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:1956
    7WD40; WD40 repeat [structural motif]
  13. XM_030243544.2XP_030099404.1  WD repeat-containing protein 17 isoform X10

    UniProtKB/TrEMBL
    Q8CFX0
    Conserved Domains (3) summary
    COG2319
    Location:41221
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:168458
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:134168
    7WD40; WD40 repeat [structural motif]
  14. XM_006509427.5XP_006509490.1  WD repeat-containing protein 17 isoform X1

    See identical proteins and their annotated locations for XP_006509490.1

    UniProtKB/TrEMBL
    E9Q271
    Conserved Domains (3) summary
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:75465
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  15. XM_030243540.2XP_030099400.1  WD repeat-containing protein 17 isoform X3

    UniProtKB/TrEMBL
    Q8C8Y2, Q8CFX0
    Conserved Domains (3) summary
    cd00200
    Location:367657
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:333367
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:51441
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_001778439.3 RNA Sequence

  2. XR_004934823.1 RNA Sequence