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Sgcz sarcoglycan zeta [ Mus musculus (house mouse) ]

Gene ID: 244431, updated on 5-Aug-2018

Summary

Official Symbol
Sgczprovided by MGI
Official Full Name
sarcoglycan zetaprovided by MGI
Primary source
MGI:MGI:2388820
See related
Ensembl:ENSMUSG00000039539 Vega:OTTMUSG00000031650
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C230085N17Rik
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Sgcz in Genome Data Viewer
Location:
8; 8 A4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (37517840..38662638, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (38585608..39724562, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene 7319 Neighboring gene tubulin, alpha 1C pseudogene Neighboring gene forkhead box N2 pseudogene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene nuclear encoded tRNA leucine 2 (anticodon CAG) Neighboring gene microRNA 383 Neighboring gene predicted gene, 40493 Neighboring gene tumor suppressor candidate 3 Neighboring gene MAD homolog 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC123465, MGC123466

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
heart contraction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane organization TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
sarcoglycan complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sarcoglycan complex IDA
Inferred from Direct Assay
more info
PubMed 
sarcolemma IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zeta-sarcoglycan
Names
ZSG1
zeta-SG

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145841.2NP_665840.2  zeta-sarcoglycan

    See identical proteins and their annotated locations for NP_665840.2

    Status: VALIDATED

    Source sequence(s)
    AK136779
    Consensus CDS
    CCDS22251.2
    UniProtKB/Swiss-Prot
    Q8BX51
    Related
    ENSMUSP00000113912.1, OTTMUSP00000041695, ENSMUST00000118896.1, OTTMUST00000078418
    Conserved Domains (1) summary
    pfam04790
    Location:38296
    Sarcoglycan_1; Sarcoglycan complex subunit protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

    Range
    37517840..38662638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509120.3XP_006509183.1  zeta-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_006509183.1

    UniProtKB/Swiss-Prot
    Q8BX51
    Conserved Domains (1) summary
    pfam04790
    Location:38296
    Sarcoglycan_1; Sarcoglycan complex subunit protein
  2. XM_011242138.1XP_011240440.1  zeta-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_011240440.1

    UniProtKB/Swiss-Prot
    Q8BX51
    Conserved Domains (1) summary
    pfam04790
    Location:30283
    Sarcoglycan_1; Sarcoglycan complex subunit protein
  3. XM_006509122.1XP_006509185.1  zeta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:5222
    Sarcoglycan_1; Sarcoglycan complex subunit protein
  4. XM_011242139.2XP_011240441.1  zeta-sarcoglycan isoform X4

    Conserved Domains (1) summary
    pfam04790
    Location:43143
    Sarcoglycan_1; Sarcoglycan complex subunit protein
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