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Gfap glial fibrillary acidic protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 24387, updated on 19-Apr-2019

Summary

Official Symbol
Gfapprovided by RGD
Official Full Name
glial fibrillary acidic proteinprovided by RGD
Primary source
RGD:2679
See related
Ensembl:ENSRNOG00000002919
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
intermediate filament protein specific for astrocytes [RGD, Feb 2006]
Expression
Restricted expression toward (RPKM 849.3) See more
Orthologs

Genomic context

See Gfap in Genome Data Viewer
Location:
10q32.1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (90990762..90999435, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (90763150..90771823, complement)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 103 Neighboring gene family with sequence similarity 187, member A Neighboring gene kinesin family member 18B Neighboring gene 60S ribosomal protein L22-like 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
PubMed 
integrin binding IDA
Inferred from Direct Assay
more info
PubMed 
kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of cytoskeleton IDA
Inferred from Direct Assay
more info
PubMed 
structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
structural molecule activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
Bergmann glial cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Bergmann glial cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
astrocyte development IEA
Inferred from Electronic Annotation
more info
 
astrocyte development ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 
extracellular matrix organization ISO
Inferred from Sequence Orthology
more info
PubMed 
intermediate filament organization ISO
Inferred from Sequence Orthology
more info
PubMed 
intermediate filament organization ISS
Inferred from Sequence or Structural Similarity
more info
 
intermediate filament-based process ISO
Inferred from Sequence Orthology
more info
PubMed 
long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 
long-term synaptic potentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
PubMed 
neuron projection regeneration IEA
Inferred from Electronic Annotation
more info
 
neuron projection regeneration ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of Schwann cell proliferation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of Schwann cell proliferation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of glial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of chaperone-mediated autophagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of chaperone-mediated autophagy ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of neurotransmitter uptake IEA
Inferred from Electronic Annotation
more info
 
regulation of neurotransmitter uptake ISO
Inferred from Sequence Orthology
more info
PubMed 
response to wounding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
astrocyte end-foot IEA
Inferred from Electronic Annotation
more info
 
astrocyte end-foot ISO
Inferred from Sequence Orthology
more info
PubMed 
astrocyte projection IDA
Inferred from Direct Assay
more info
PubMed 
astrocyte projection ISO
Inferred from Sequence Orthology
more info
PubMed 
cell body IEA
Inferred from Electronic Annotation
more info
 
cell body ISO
Inferred from Sequence Orthology
more info
PubMed 
cell projection ISO
Inferred from Sequence Orthology
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
cytoplasmic side of lysosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton ISO
Inferred from Sequence Orthology
more info
PubMed 
glial cell projection ISO
Inferred from Sequence Orthology
more info
PubMed 
intermediate filament IEA
Inferred from Electronic Annotation
more info
 
intermediate filament ISO
Inferred from Sequence Orthology
more info
PubMed 
intermediate filament cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with lysosome ISO
Inferred from Sequence Orthology
more info
PubMed 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
glial fibrillary acidic protein
Names
glial fibrillary acidic protein alpha
glial fibrillary acidic protein delta
intermediate filament

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017009.2NP_058705.2  glial fibrillary acidic protein

    See identical proteins and their annotated locations for NP_058705.2

    Status: PROVISIONAL

    Source sequence(s)
    BC088851
    UniProtKB/Swiss-Prot
    P47819
    Related
    ENSRNOP00000032389.2, ENSRNOT00000034401.5
    Conserved Domains (2) summary
    pfam00038
    Location:66374
    Filament; Intermediate filament protein
    pfam04732
    Location:464
    Filament_head; Intermediate filament head (DNA binding) region

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    90990762..90999435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    86555367..86564160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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