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Slc13a4 solute carrier family 13 (sodium/sulfate symporters), member 4 [ Mus musculus (house mouse) ]

Gene ID: 243755, updated on 9-Mar-2023

Summary

Official Symbol
Slc13a4provided by MGI
Official Full Name
solute carrier family 13 (sodium/sulfate symporters), member 4provided by MGI
Primary source
MGI:MGI:2442367
See related
Ensembl:ENSMUSG00000029843 AllianceGenome:MGI:2442367
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SUT1; SUT-1; 9630060C05Rik
Summary
Predicted to be involved in anion transmembrane transport. Predicted to be integral component of membrane. Is expressed in brain meninges; choroid plexus; lung; and urethra. Orthologous to human SLC13A4 (solute carrier family 13 member 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta adult (RPKM 18.6), frontal lobe adult (RPKM 2.9) and 10 other tissues See more
Orthologs
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Genomic context

See Slc13a4 in Genome Data Viewer
Location:
6; 6 B1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (35244888..35285061, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (35267953..35308126, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene nucleoporin 205 Neighboring gene predicted gene, 23435 Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene family with sequence similarity 180, member A Neighboring gene RIKEN cDNA 1700065J11 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (3)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables sodium:sulfate symporter activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within sodium ion transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within sulfate transmembrane transport ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
solute carrier family 13 member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172892.3NP_766480.1  solute carrier family 13 member 4

    See identical proteins and their annotated locations for NP_766480.1

    Status: VALIDATED

    Source sequence(s)
    AK036354, AW536922
    Consensus CDS
    CCDS20000.1
    UniProtKB/TrEMBL
    Q8BZ82
    Related
    ENSMUSP00000031868.5, ENSMUST00000031868.5
    Conserved Domains (2) summary
    TIGR00785
    Location:40602
    dass; anion transporter
    cl21473
    Location:31607
    ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    35244888..35285061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)