Format

Send to:

Choose Destination

Slc23a4 solute carrier family 23 member 4 [ Mus musculus (house mouse) ]

Gene ID: 243753, updated on 25-Sep-2017

Summary

Official Symbol
Slc23a4provided by MGI
Official Full Name
solute carrier family 23 member 4provided by MGI
Primary source
MGI:MGI:1917272
See related
Ensembl:ENSMUSG00000029847 Vega:OTTMUSG00000022784
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm468; 2010107G12Rik
Expression
Biased expression in small intestine adult (RPKM 30.9), large intestine adult (RPKM 17.8) and 4 other tissues See more

Genomic context

See Slc23a4 in Genome Data Viewer
Location:
6; 6 B1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (34945294..34988495, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (34895294..34927999, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene cell cycle regulator of NHEJ Neighboring gene WD repeat domain 91 Neighboring gene stimulated by retinoic acid gene 8 Neighboring gene CCR4-NOT transcription complex, subunit 4 Neighboring gene predicted gene, 33046 Neighboring gene nucleoporin 205

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC243753

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025573.2NP_001020744.2  uncharacterized protein LOC243753

    Status: VALIDATED

    Source sequence(s)
    AC153869, BC075651
    Consensus CDS
    CCDS19998.1
    UniProtKB/TrEMBL
    E9PW54, Q6DIB3
    Related
    ENSMUSP00000041436.7, OTTMUSP00000026141, ENSMUST00000044387.13, OTTMUST00000054714
    Conserved Domains (1) summary
    cl23746
    Location:34274
    HCO3_cotransp; HCO3- transporter family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    34945294..34988495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506134.3XP_006506197.1  uncharacterized protein LOC243753 isoform X1

    UniProtKB/TrEMBL
    A0A0J9YUX7
    Related
    ENSMUSP00000144387.1, OTTMUSP00000072901, ENSMUST00000201355.3, OTTMUST00000138738
    Conserved Domains (2) summary
    pfam00860
    Location:58488
    Xan_ur_permease; Permease family
    cl23746
    Location:52531
    HCO3_cotransp; HCO3- transporter family
  2. XM_006506135.3XP_006506198.1  uncharacterized protein LOC243753 isoform X2

    Conserved Domains (1) summary
    cl23746
    Location:9225
    HCO3_cotransp; HCO3- transporter family
Support Center