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Slc23a4 solute carrier family 23 member 4 [ Mus musculus (house mouse) ]

Gene ID: 243753, updated on 26-Sep-2022

Summary

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Official Symbol
Slc23a4provided by MGI
Official Full Name
solute carrier family 23 member 4provided by MGI
Primary source
MGI:MGI:1917272
See related
Ensembl:ENSMUSG00000029847 AllianceGenome:MGI:1917272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm468; 2010107G12Rik
Summary
Orthologous to human SLC23A4P (solute carrier family 23 member 4, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in small intestine adult (RPKM 30.9), large intestine adult (RPKM 17.8) and 4 other tissues See more
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Genomic context

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See Slc23a4 in Genome Data Viewer
Location:
6; 6 B1
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (34922221..34965430, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (34945286..34988495, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 91 Neighboring gene stimulated by retinoic acid gene 8 Neighboring gene CCR4-NOT transcription complex, subunit 4 Neighboring gene predicted gene, 33046 Neighboring gene nucleoporin 205 Neighboring gene predicted gene, 23435

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC243753

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025573.2 → NP_001020744.2  uncharacterized protein LOC243753

    Status: VALIDATED

    Source sequence(s)
    AC153869, BC075651
    Consensus CDS
    CCDS19998.1
    UniProtKB/TrEMBL
    A0A8C6IC82, E9PW54, Q6DIB3
    Related
    ENSMUSP00000041436.8, ENSMUST00000044387.14
    Conserved Domains (1) summary
    cl23746
    Location:34 → 274
    HCO3_cotransp; HCO3- transporter family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    34922221..34965430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506134.4 → XP_006506197.1  uncharacterized protein LOC243753 isoform X1

    UniProtKB/TrEMBL
    A0A0J9YUX7
    Related
    ENSMUSP00000144387.2, ENSMUST00000201355.4
    Conserved Domains (1) summary
    pfam00860
    Location:58 → 488
    Xan_ur_permease; Permease family

  2. XM_006506135.5 → XP_006506198.1  uncharacterized protein LOC243753 isoform X2

    Conserved Domains (1) summary
    cl23746
    Location:8 → 188
    Xan_ur_permease; Permease family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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