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Clec1a C-type lectin domain family 1, member a [ Mus musculus (house mouse) ]

Gene ID: 243653, updated on 27-Jan-2018
Official Symbol
Clec1aprovided by MGI
Official Full Name
C-type lectin domain family 1, member aprovided by MGI
Primary source
MGI:MGI:2444151
See related
Ensembl:ENSMUSG00000033082 Vega:OTTMUSG00000056468
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5930406N14Rik
Expression
Biased expression in lung adult (RPKM 14.8), ovary adult (RPKM 2.0) and 5 other tissues See more
Orthologs
See Clec1a in Genome Data Viewer
Location:
6; 6 F3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (129426684..129452000, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (129376702..129402018, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 12, member B Neighboring gene C-type lectin domain family 1, member b Neighboring gene C-type lectin domain family 9, member a Neighboring gene predicted gene, 45969 Neighboring gene C-type lectin domain family 7, member a Neighboring gene oxidized low density lipoprotein (lectin-like) receptor 1

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
C-type lectin domain family 1 member A

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347475.1NP_001334404.1  C-type lectin domain family 1 member A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate frame-shifting splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2) with a distinct C-terminus, compared to isoform 1
    Source sequence(s)
    AC138620, AK031121, AK036846, BC052840, BX512526
    Consensus CDS
    CCDS85169.1
    UniProtKB/Swiss-Prot
    Q8BWY2
    UniProtKB/TrEMBL
    A0A0N4SV03, Q8BZ31
  2. NM_175526.3NP_780735.2  C-type lectin domain family 1 member A isoform 1

    See identical proteins and their annotated locations for NP_780735.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC138620, AK049608, BX512526
    Consensus CDS
    CCDS20587.1
    UniProtKB/Swiss-Prot
    Q8BWY2
    Related
    ENSMUSP00000047065.7, OTTMUSP00000073181, ENSMUST00000037481.9, OTTMUST00000139489
    Conserved Domains (1) summary
    cd03593
    Location:136258
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    129426684..129452000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506120.2XP_006506183.1  C-type lectin domain family 1 member A isoform X1

    Related
    ENSMUSP00000144896.1, OTTMUSP00000073180, ENSMUST00000203162.2, OTTMUST00000139488
    Conserved Domains (1) summary
    cl02432
    Location:136180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
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