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Fam110b family with sequence similarity 110, member B [ Mus musculus (house mouse) ]

Gene ID: 242297, updated on 26-Sep-2022

Summary

Official Symbol
Fam110bprovided by MGI
Official Full Name
family with sequence similarity 110, member Bprovided by MGI
Primary source
MGI:MGI:1916593
See related
Ensembl:ENSMUSG00000049119 AllianceGenome:MGI:1916593
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5031405P22; 1700012H17Rik
Summary
Predicted to be located in cytosol and mitochondrion. Orthologous to human FAM110B (family with sequence similarity 110 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E18 (RPKM 18.0), whole brain E14.5 (RPKM 14.4) and 21 other tissues See more
Orthologs
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Genomic context

See Fam110b in Genome Data Viewer
Location:
4; 4 A1
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (5644009..5801101)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (5644009..5801101)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 20, member B pseudogene Neighboring gene RIKEN cDNA 4930423M02 gene Neighboring gene predicted gene, 24337 Neighboring gene VISTA enhancer mm718 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene zinc finger protein 46 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355716.1NP_001342645.1  protein FAM110B

    Status: VALIDATED

    Source sequence(s)
    AK049898, AW049855, BC055683, BY292674
    Consensus CDS
    CCDS17948.1
    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Related
    ENSMUSP00000104017.2, ENSMUST00000108380.2
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  2. NM_173426.3NP_775602.1  protein FAM110B

    See identical proteins and their annotated locations for NP_775602.1

    Status: VALIDATED

    Source sequence(s)
    AK049898, AK052596, AK080588, AL772304, AW049855, BY269222
    Consensus CDS
    CCDS17948.1
    UniProtKB/Swiss-Prot
    Q3UKH0, Q8C739
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Related
    ENSMUSP00000062734.7, ENSMUST00000054857.13
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    5644009..5801101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537896.4XP_006537959.1  protein FAM110B isoform X1

    See identical proteins and their annotated locations for XP_006537959.1

    UniProtKB/Swiss-Prot
    Q3UKH0, Q8C739
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  2. XM_030253522.2XP_030109382.1  protein FAM110B isoform X1

    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  3. XM_030253518.2XP_030109378.1  protein FAM110B isoform X1

    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  4. XM_030253519.1XP_030109379.1  protein FAM110B isoform X1

    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  5. XM_030253523.1XP_030109383.1  protein FAM110B isoform X1

    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  6. XM_030253520.1XP_030109380.1  protein FAM110B isoform X1

    UniProtKB/Swiss-Prot
    Q3UKH0
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  7. XM_006537897.1XP_006537960.1  protein FAM110B isoform X1

    See identical proteins and their annotated locations for XP_006537960.1

    UniProtKB/Swiss-Prot
    Q3UKH0, Q8C739
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Related
    ENSMUSP00000127942.2, ENSMUST00000171403.2
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus
  8. XM_006537898.5XP_006537961.1  protein FAM110B isoform X1

    See identical proteins and their annotated locations for XP_006537961.1

    UniProtKB/Swiss-Prot
    Q3UKH0, Q8C739
    UniProtKB/TrEMBL
    A0A8C6HZ66
    Conserved Domains (2) summary
    pfam14160
    Location:249357
    FAM110_C; Centrosome-associated C-terminus
    pfam14161
    Location:17118
    FAM110_N; Centrosome-associated N-terminus