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D430041D05Rik RIKEN cDNA D430041D05 gene [ Mus musculus (house mouse) ]

Gene ID: 241589, updated on 26-Sep-2022

Summary

Official Symbol
D430041D05Rikprovided by MGI
Official Full Name
RIKEN cDNA D430041D05 geneprovided by MGI
Primary source
MGI:MGI:2181743
See related
Ensembl:ENSMUSG00000068373 AllianceGenome:MGI:2181743
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G2; 9630056G07Rik
Summary
Is expressed in nervous system; neural retina; thymus; and upper jaw molar. Orthologous to human KIAA1549L (KIAA1549 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 8.6), cerebellum adult (RPKM 6.9) and 7 other tissues See more
Orthologs
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Genomic context

See D430041D05Rik in Genome Data Viewer
Location:
2 E2; 2 54.59 cM
Exon count:
22
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (103973418..104242595, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104143073..104411870, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A930018P22 gene Neighboring gene CD59a antigen Neighboring gene predicted gene, 22501 Neighboring gene predicted gene 13883 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 35606 Neighboring gene microRNA 1902 Neighboring gene homeodomain interacting protein kinase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0606 protein KIAA1549L homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033347.2NP_001028519.2  UPF0606 protein KIAA1549L homolog isoform 2

    Status: PROVISIONAL

    Source sequence(s)
    AI606651, AI845358, AK052518, AL844591, BB646253, BC096034, BF464989, BX517992, CN457086, CX239849
    Consensus CDS
    CCDS38190.1
    UniProtKB/TrEMBL
    D3YZ21
    Related
    ENSMUSP00000106756.2, ENSMUST00000089726.10
    Conserved Domains (1) summary
    pfam12877
    Location:4981134
    DUF3827; Domain of unknown function (DUF3827)
  2. NM_001368844.1NP_001355773.1  UPF0606 protein KIAA1549L homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AL844591, AL954370, BX813317
    Consensus CDS
    CCDS89531.1
    UniProtKB/TrEMBL
    A0A2R8VHF1
    Related
    ENSMUSP00000155023.2, ENSMUST00000136156.9
    Conserved Domains (1) summary
    pfam12877
    Location:4981135
    DUF3827; Domain of unknown function (DUF3827)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    103973418..104242595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239527.3XP_011237829.1  UPF0606 protein KIAA1549L homolog isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:107667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:12301866
    DUF3827; Domain of unknown function (DUF3827)
  2. XM_011239526.3XP_011237828.1  UPF0606 protein KIAA1549L homolog isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:107667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:12301867
    DUF3827; Domain of unknown function (DUF3827)
  3. XM_006499487.5XP_006499550.1  UPF0606 protein KIAA1549L homolog isoform X5

    UniProtKB/TrEMBL
    F6ZGR6
    Related
    ENSMUSP00000117041.3, ENSMUST00000141159.9
    Conserved Domains (1) summary
    pfam12877
    Location:3831020
    DUF3827; Domain of unknown function (DUF3827)
  4. XM_006499483.4XP_006499546.1  UPF0606 protein KIAA1549L homolog isoform X3

    Related
    ENSMUSP00000155485.2, ENSMUST00000230671.2
    Conserved Domains (2) summary
    PHA03247
    Location:107667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:12201857
    DUF3827; Domain of unknown function (DUF3827)
  5. XM_011239528.4XP_011237830.1  UPF0606 protein KIAA1549L homolog isoform X4

    Conserved Domains (2) summary
    PHA03247
    Location:107667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:12301806
    DUF3827; Domain of unknown function (DUF3827)

RNA

  1. XR_866274.4 RNA Sequence