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Ankmy1 ankyrin repeat and MYND domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 241158, updated on 5-Mar-2024

Summary

Official Symbol
Ankmy1provided by MGI
Official Full Name
ankyrin repeat and MYND domain containing 1provided by MGI
Primary source
MGI:MGI:3045261
See related
Ensembl:ENSMUSG00000034212 AllianceGenome:MGI:3045261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ZMYND13; 4930483I10Rik
Summary
Predicted to enable metal ion binding activity. Orthologous to human ANKMY1 (ankyrin repeat and MYND domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 13.4) and thymus adult (RPKM 0.8) See more
Orthologs
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Genomic context

Location:
1 D; 1 46.6 cM
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (92787541..92830708, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (92859840..92902987, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene glypican 1 Neighboring gene predicted gene 29480 Neighboring gene microRNA 149 Neighboring gene predicted gene, 57577 Neighboring gene RIKEN cDNA 5033417F24 gene Neighboring gene dual specificity phosphatase 28 Neighboring gene arginyl aminopeptidase (aminopeptidase B)-like 1 Neighboring gene STARR-seq mESC enhancer starr_01722

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

General gene information

Markers

Clone Names

  • MGC141406

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat and MYND domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347091.1NP_001334020.1  ankyrin repeat and MYND domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC131059
    Consensus CDS
    CCDS83575.1
    UniProtKB/Swiss-Prot
    Q0IJ76, Q8C0W1
    UniProtKB/TrEMBL
    E0CYY3
    Related
    ENSMUSP00000123787.2, ENSMUST00000160548.8
  2. NM_172850.3NP_766438.2  ankyrin repeat and MYND domain-containing protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK029700, BC120887
    Consensus CDS
    CCDS15178.2
    UniProtKB/Swiss-Prot
    Q0IJ76, Q8C0W1
    UniProtKB/TrEMBL
    E9PUG3
    Related
    ENSMUSP00000108622.2, ENSMUST00000112998.2
    Conserved Domains (5) summary
    cd00204
    Location:611777
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01753
    Location:940980
    zf-MYND; MYND finger
    pfam02493
    Location:112134
    MORN; MORN repeat
    pfam12796
    Location:724826
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:720754
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    92787541..92830708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529591.5XP_006529654.1  ankyrin repeat and MYND domain-containing protein 1 isoform X2

    Conserved Domains (5) summary
    PHA02875
    Location:595836
    PHA02875; ankyrin repeat protein; Provisional
    PLN03185
    Location:83184
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    sd00045
    Location:720754
    ANK; ANK repeat [structural motif]
    pfam01753
    Location:940980
    zf-MYND; MYND finger
    cl39094
    Location:373464
    Ank_2; Ankyrin repeats (3 copies)
  2. XM_006529590.5XP_006529653.1  ankyrin repeat and MYND domain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    PHA02875
    Location:595836
    PHA02875; ankyrin repeat protein; Provisional
    PLN03185
    Location:83184
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    sd00045
    Location:720754
    ANK; ANK repeat [structural motif]
    pfam01753
    Location:941981
    zf-MYND; MYND finger
    cl39094
    Location:373464
    Ank_2; Ankyrin repeats (3 copies)
  3. XM_017320666.3XP_017176155.1  ankyrin repeat and MYND domain-containing protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q0IJ76, Q8C0W1
    Conserved Domains (4) summary
    PHA02875
    Location:446687
    PHA02875; ankyrin repeat protein; Provisional
    sd00045
    Location:571605
    ANK; ANK repeat [structural motif]
    pfam01753
    Location:792832
    zf-MYND; MYND finger
    cl39094
    Location:224315
    Ank_2; Ankyrin repeats (3 copies)