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Ubd ubiquitin D [ Mus musculus (house mouse) ]

Gene ID: 24108, updated on 23-Jun-2021

Summary

Official Symbol
Ubdprovided by MGI
Official Full Name
ubiquitin Dprovided by MGI
Primary source
MGI:MGI:1344410
See related
Ensembl:ENSMUSG00000035186
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
FAT1; FAT10; Diubiq
Expression
Biased expression in thymus adult (RPKM 9.7), large intestine adult (RPKM 5.6) and 3 other tissues See more
Orthologs
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Genomic context

See Ubd in Genome Data Viewer
Location:
17; 17 B1
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (37504783..37506992)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (37193892..37196101)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (37330837..37333046)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor 753, pseudogene 1 Neighboring gene predicted gene 7031 Neighboring gene olfactory receptor 94 Neighboring gene olfactory receptor 95

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables proteasome binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables proteasome binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in aggresome assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in myeloid dendritic cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of I-kappaB kinase/NF-kappaB signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of I-kappaB kinase/NF-kappaB signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of I-kappaB kinase/NF-kappaB signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within positive regulation of apoptotic process IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in positive regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in protein modification by small protein conjugation IC
Inferred by Curator
more info
PubMed 
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein ubiquitination IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein ubiquitination ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of mitotic cell cycle phase transition ISO
Inferred from Sequence Orthology
more info
 
involved_in response to interferon-gamma IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within response to interferon-gamma IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to tumor necrosis factor IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within response to tumor necrosis factor IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in aggresome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in fibrillar center ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ubiquitin D
Names
Diubiquitin
ubiquitin-like protein FAT10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023137.3NP_075626.1  ubiquitin D

    See identical proteins and their annotated locations for NP_075626.1

    Status: VALIDATED

    Source sequence(s)
    AK008116, AK008552, BF661521
    Consensus CDS
    CCDS28737.1
    UniProtKB/Swiss-Prot
    P63072
    Related
    ENSMUSP00000035808.7, ENSMUST00000038844.7
    Conserved Domains (2) summary
    smart00213
    Location:976
    UBQ; Ubiquitin homologues
    cl00155
    Location:96155
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    37504783..37506992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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