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Scamp2 secretory carrier membrane protein 2 [ Mus musculus (house mouse) ]

Gene ID: 24044, updated on 23-Jun-2021

Summary

Official Symbol
Scamp2provided by MGI
Official Full Name
secretory carrier membrane protein 2provided by MGI
Primary source
MGI:MGI:1346518
See related
Ensembl:ENSMUSG00000040188
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sc; Sc2; AI875466
Expression
Ubiquitous expression in large intestine adult (RPKM 92.7), testis adult (RPKM 90.3) and 28 other tissues See more
Orthologs
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Genomic context

See Scamp2 in Genome Data Viewer
Location:
9; 9 B
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (57468227..57496081)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (57560944..57588798)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (57408751..57436605)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 5A Neighboring gene family with sequence similarity 219, member B Neighboring gene mannose phosphate isomerase Neighboring gene unc-51-like kinase 3 Neighboring gene complexin 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in recycling endosome membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in trans-Golgi network membrane ISO
Inferred from Sequence Orthology
more info
 
located_in transport vesicle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
secretory carrier-associated membrane protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378928.1NP_001365857.1  secretory carrier-associated membrane protein 2 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC122528, AC164548
    Conserved Domains (1) summary
    pfam04144
    Location:161336
    SCAMP; SCAMP family
  2. NM_022813.3NP_073724.1  secretory carrier-associated membrane protein 2 isoform 2

    See identical proteins and their annotated locations for NP_073724.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AF295402, AK161002, CA979044, CX217627
    Consensus CDS
    CCDS23224.1
    UniProtKB/Swiss-Prot
    Q9ERN0
    UniProtKB/TrEMBL
    Q3TAL2, Q3TU28
    Related
    ENSMUSP00000038350.10, ENSMUST00000045791.11
    Conserved Domains (1) summary
    pfam04144
    Location:118293
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    57468227..57496081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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