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Zfp952 zinc finger protein 952 [ Mus musculus (house mouse) ]

Gene ID: 240067, updated on 8-Dec-2022

Summary

Official Symbol
Zfp952provided by MGI
Official Full Name
zinc finger protein 952provided by MGI
Primary source
MGI:MGI:2441928
See related
Ensembl:ENSMUSG00000053390 AllianceGenome:MGI:2441928
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C920016K16Rik
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 3.4), CNS E14 (RPKM 3.0) and 25 other tissues See more
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Genomic context

See Zfp952 in Genome Data Viewer
Location:
17; 17 B1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (33212083..33224431)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (32993108..33005457)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene Neighboring gene zinc finger protein 472 Neighboring gene zinc finger protein 763 Neighboring gene PHD finger protein 8, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
uncharacterized protein LOC240067

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045559.1NP_001039024.1  uncharacterized protein LOC240067

    Status: VALIDATED

    Source sequence(s)
    BC051011, CA320661, CT033772
    Consensus CDS
    CCDS37559.1
    UniProtKB/TrEMBL
    B0V2W4, D3Z6L1
    Related
    ENSMUSP00000084949.5, ENSMUST00000087666.11
    Conserved Domains (5) summary
    smart00349
    Location:1050
    KRAB; krueppel associated box
    COG5048
    Location:234494
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:337357
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1049
    KRAB; KRAB box
    pfam13465
    Location:349374
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    33212083..33224431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249795.2XP_030105655.1  uncharacterized protein LOC240067 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:197457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:300320
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_030249793.2XP_030105653.1  uncharacterized protein LOC240067 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:239499
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342362
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1455
    KRAB; KRAB box
  3. XM_030249794.2XP_030105654.1  uncharacterized protein LOC240067 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:239499
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342362
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1455
    KRAB; KRAB box
  4. XM_017317471.1XP_017172960.1  uncharacterized protein LOC240067 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:197457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:300320
    ZF_C2H2; C2H2 Zn finger [structural motif]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_199020.1: Suppressed sequence

    Description
    NM_199020.1: This RefSeq was permanently suppressed because it contains the wrong CDS.