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Rai2 retinoic acid induced 2 [ Mus musculus (house mouse) ]

Gene ID: 24004, updated on 31-Jan-2019

Summary

Official Symbol
Rai2provided by MGI
Official Full Name
retinoic acid induced 2provided by MGI
Primary source
MGI:MGI:1344378
See related
Ensembl:ENSMUSG00000043518
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3f8
Expression
Broad expression in ovary adult (RPKM 13.7), heart adult (RPKM 12.5) and 24 other tissues See more
Orthologs

Genomic context

See Rai2 in Genome Data Viewer
Location:
X; X F4
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (161717036..161779494)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (158154968..158217426)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36049 Neighboring gene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1 Neighboring gene Scm polycomb group protein like 1 Neighboring gene NHS actin remodeling regulator

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
retinoic acid-induced protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103367.1NP_001096837.1  retinoic acid-induced protein 2

    See identical proteins and their annotated locations for NP_001096837.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK143442, BB173369, BB857753, BY283618, BY589134
    Consensus CDS
    CCDS30507.1
    UniProtKB/Swiss-Prot
    Q9QVY8
    Related
    ENSMUSP00000107957.1, ENSMUST00000112338.1
  2. NM_198409.3NP_940801.2  retinoic acid-induced protein 2

    See identical proteins and their annotated locations for NP_940801.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BB173369, BC061184, BY100054, X76652
    Consensus CDS
    CCDS30507.1
    UniProtKB/Swiss-Prot
    Q9QVY8
    UniProtKB/TrEMBL
    Q6P8M4
    Related
    ENSMUSP00000051618.7, ENSMUST00000061514.7

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    161717036..161779494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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