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Zfp994 zinc finger protein 994 [ Mus musculus (house mouse) ]

Gene ID: 240038, updated on 8-Feb-2024

Summary

Official Symbol
Zfp994provided by MGI
Official Full Name
zinc finger protein 994provided by MGI
Primary source
MGI:MGI:3643318
See related
Ensembl:ENSMUSG00000096433 AllianceGenome:MGI:3643318
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4944; EG240038
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Zfp994 in Genome Data Viewer
Location:
17 A3.3; 17 11.4 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (22416246..22444640, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (22197265..22225659, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42024 Neighboring gene zinc finger protein 947 Neighboring gene sorting nexin 4 pseudogene Neighboring gene predicted gene, 52309 Neighboring gene STARR-seq mESC enhancer starr_42025 Neighboring gene STARR-positive B cell enhancer ABC_E4195 Neighboring gene STARR-seq mESC enhancer starr_42027 Neighboring gene predicted gene 7072 Neighboring gene STARR-seq mESC enhancer starr_42028 Neighboring gene predicted gene, 53992 Neighboring gene zinc finger protein 944 Neighboring gene STARR-positive B cell enhancer ABC_E5576 Neighboring gene zinc finger protein 758

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC240038

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205095.2NP_001192024.1  uncharacterized protein LOC240038 isoform 1

    See identical proteins and their annotated locations for NP_001192024.1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    Consensus CDS
    CCDS57054.1
    UniProtKB/TrEMBL
    J3QM38
    Related
    ENSMUSP00000136105.2, ENSMUST00000179996.3
    Conserved Domains (3) summary
    COG5048
    Location:265661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1352
    KRAB; KRAB box
  2. NM_001418923.1NP_001405852.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  3. NM_001418925.1NP_001405854.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  4. NM_001418926.1NP_001405855.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  5. NM_001418928.1NP_001405857.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  6. NM_001418931.1NP_001405860.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  7. NM_001418933.1NP_001405862.1  uncharacterized protein LOC240038 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT030661
    UniProtKB/TrEMBL
    J3QM38
  8. NM_001418934.1NP_001405863.1  uncharacterized protein LOC240038 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030661
  9. NM_001418936.1NP_001405865.1  uncharacterized protein LOC240038 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT030661

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    22416246..22444640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249776.1XP_030105636.1  uncharacterized protein LOC240038 isoform X1

    UniProtKB/TrEMBL
    J3QM38
    Conserved Domains (3) summary
    COG5048
    Location:265661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1352
    KRAB; KRAB box
  2. XM_030249777.1XP_030105637.1  uncharacterized protein LOC240038 isoform X1

    UniProtKB/TrEMBL
    J3QM38
    Conserved Domains (3) summary
    COG5048
    Location:265661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1352
    KRAB; KRAB box