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Phf20l1 PHD finger protein 20-like 1 [ Mus musculus (house mouse) ]

Gene ID: 239510, updated on 12-Aug-2019

Summary

Official Symbol
Phf20l1provided by MGI
Official Full Name
PHD finger protein 20-like 1provided by MGI
Primary source
MGI:MGI:2444412
See related
Ensembl:ENSMUSG00000072501
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CGI-72; E130113K22Rik
Expression
Broad expression in CNS E18 (RPKM 6.6), CNS E14 (RPKM 6.2) and 25 other tissues See more
Orthologs

Genomic context

See Phf20l1 in Genome Data Viewer
Location:
15; 15 D2
Exon count:
22
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (66577500..66647043)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (66409134..66476817)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 6 (testis) Neighboring gene predicted gene, 31006 Neighboring gene transmembrane protein 71 Neighboring gene thyroglobulin Neighboring gene VISTA enhancer mm104 Neighboring gene src-like adaptor Neighboring gene predicted gene, 46514

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
PHD finger protein 20-like protein 1
Names
tudor domain-containing protein PHF20L1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081409.1NP_001074878.1  PHD finger protein 20-like protein 1

    See identical proteins and their annotated locations for NP_001074878.1

    Status: PROVISIONAL

    Source sequence(s)
    AC163443
    Consensus CDS
    CCDS49621.1
    UniProtKB/Swiss-Prot
    Q8CCJ9
    Related
    ENSMUSP00000155487.1, ENSMUST00000229160.1
    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:683728
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:210317
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:318383
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p6 C57BL/6J

    Range
    66577500..66647043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520926.4XP_006520989.1  PHD finger protein 20-like protein 1 isoform X8

    Related
    ENSMUSP00000155575.1, ENSMUST00000230882.1
    Conserved Domains (3) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    pfam12618
    Location:184284
    DUF3776; Protein of unknown function (DUF3776)
    cl17705
    Location:368
    MBT; mbt repeat
  2. XM_006520916.4XP_006520979.1  PHD finger protein 20-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006520979.1

    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:688733
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:214322
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:323388
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  3. XM_006520918.4XP_006520981.1  PHD finger protein 20-like protein 1 isoform X2

    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:687732
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:214321
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:322387
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  4. XM_006520920.4XP_006520983.1  PHD finger protein 20-like protein 1 isoform X5

    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:658703
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:184292
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:293358
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  5. XM_030248543.1XP_030104403.1  PHD finger protein 20-like protein 1 isoform X2

  6. XM_030248546.1XP_030104406.1  PHD finger protein 20-like protein 1 isoform X5

  7. XM_006520921.4XP_006520984.1  PHD finger protein 20-like protein 1 isoform X6

    Related
    ENSMUSP00000155465.1, ENSMUST00000230948.1
    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:657702
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:184291
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:292357
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  8. XM_030248545.1XP_030104405.1  PHD finger protein 20-like protein 1 isoform X4

  9. XM_006520919.4XP_006520982.1  PHD finger protein 20-like protein 1 isoform X3

    Related
    ENSMUSP00000035682.9, ENSMUST00000048188.9
    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:684729
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:210318
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:319384
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  10. XM_006520917.4XP_006520980.1  PHD finger protein 20-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006520980.1

    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:688733
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:214322
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:323388
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  11. XM_030248548.1XP_030104408.1  PHD finger protein 20-like protein 1 isoform X7

  12. XM_017316601.2XP_017172090.1  PHD finger protein 20-like protein 1 isoform X6

    Conserved Domains (5) summary
    cd04508
    Location:90135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd15633
    Location:657702
    PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
    pfam12618
    Location:184291
    DUF3776; Protein of unknown function (DUF3776)
    pfam16660
    Location:292357
    PHD20L1_u1; PHD finger protein 20-like protein 1
    cl17705
    Location:368
    MBT; mbt repeat
  13. XM_030248544.1XP_030104404.1  PHD finger protein 20-like protein 1 isoform X3

  14. XM_030248547.1XP_030104407.1  PHD finger protein 20-like protein 1 isoform X7

  15. XM_030248549.1XP_030104409.1  PHD finger protein 20-like protein 1 isoform X7

RNA

  1. XR_001781525.2 RNA Sequence

  2. XR_001781524.2 RNA Sequence

  3. XR_001781526.2 RNA Sequence

  4. XR_003951380.1 RNA Sequence

  5. XR_003951377.1 RNA Sequence

  6. XR_003951386.1 RNA Sequence

  7. XR_003951379.1 RNA Sequence

  8. XR_003951381.1 RNA Sequence

  9. XR_003951385.1 RNA Sequence

  10. XR_003951382.1 RNA Sequence

  11. XR_003951387.1 RNA Sequence

  12. XR_003951383.1 RNA Sequence

  13. XR_003951378.1 RNA Sequence

  14. XR_003951376.1 RNA Sequence

  15. XR_003951384.1 RNA Sequence

  16. XR_001781530.2 RNA Sequence

  17. XR_001781529.2 RNA Sequence

  18. XR_003951375.1 RNA Sequence

  19. XR_001781531.2 RNA Sequence

  20. XR_001781528.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178718.2: Suppressed sequence

    Description
    NM_178718.2: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
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