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Cdhr18 cadherin related family member 18 [ Mus musculus (house mouse) ]

Gene ID: 238939, updated on 8-Dec-2022

Summary

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Official Symbol
Cdhr18provided by MGI
Official Full Name
cadherin related family member 18provided by MGI
Primary source
MGI:MGI:2685127
See related
Ensembl:ENSMUSG00000084902 AllianceGenome:MGI:2685127
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm281
Expression
Biased expression in lung adult (RPKM 1.0) and ovary adult (RPKM 0.1) See more
Orthologs
human all
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Genomic context

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See Cdhr18 in Genome Data Viewer
Location:
14; 14 A1
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (8555242..8641335)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (13828428..13914521, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ataxin 7 Neighboring gene predicted gene, 53821 Neighboring gene THO complex 7 Neighboring gene predicted gene 11100 Neighboring gene zinc finger, AN1-type domain 5 pseudogene Neighboring gene predicted gene, 25964 Neighboring gene ribosomal protein L19, pseudogene 4 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in adherens junction organization IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in cell morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in cell-cell adhesion mediated by cadherin IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in cell-cell junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
is_active_in axon terminus IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
part_of catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in synaptic cleft IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
cadherin-related family member 3; uncharacterized protein LOC238939

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001393529.1 → NP_001380458.1  uncharacterized protein LOC238939 precursor

    Status: VALIDATED

    Source sequence(s)
    AC171681
    Conserved Domains (2) summary
    cd11304
    Location:471 → 569
    Cadherin_repeat; Cadherin tandem repeat domain
    cl29226
    Location:82 → 126
    Cadherin; Cadherin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    8555242..8641335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244864.1 → XP_011243166.1  cadherin-related family member 3

    Related
    ENSMUSP00000121887.3, ENSMUST00000144914.3
    Conserved Domains (2) summary
    cd11304
    Location:471 → 569
    Cadherin_repeat; Cadherin tandem repeat domain
    cl29226
    Location:82 → 126
    Cadherin; Cadherin domain
Nucleotide Protein Strain
Heading Accession and Version

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