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Cntnap3 contactin associated protein-like 3 [ Mus musculus (house mouse) ]

Gene ID: 238680, updated on 31-Jan-2019

Summary

Official Symbol
Cntnap3provided by MGI
Official Full Name
contactin associated protein-like 3provided by MGI
Primary source
MGI:MGI:3588199
See related
Ensembl:ENSMUSG00000033063
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in frontal lobe adult (RPKM 1.6), CNS E18 (RPKM 1.4) and 8 other tissues See more

Genomic context

See Cntnap3 in Genome Data Viewer
Location:
13; 13 B3
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (64737591..64904029, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (64838899..65005196, complement)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene methylmalonic aciduria type A pseudogene Neighboring gene ribosomal protein L23a pseudogene Neighboring gene eukaryotic translation initiation factor 1, pseudogene 2 Neighboring gene spermatogenesis associated 31

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
contactin-associated protein-like 3
Names
cell recognition molecule Caspr3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081129.1NP_001074598.1  contactin-associated protein-like 3 precursor

    Status: PROVISIONAL

    Source sequence(s)
    AC101142, AC156576, AC159190
    Consensus CDS
    CCDS36703.1
    UniProtKB/TrEMBL
    E9PY62
    Related
    ENSMUSP00000089140.4, ENSMUST00000091554.5
    Conserved Domains (6) summary
    smart00231
    Location:58180
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
    cd00054
    Location:551586
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00057
    Location:57179
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:796940
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam02210
    Location:402525
    Laminin_G_2; Laminin G domain
    cl00085
    Location:593638
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

    Range
    64737591..64904029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244524.2XP_011242826.1  contactin-associated protein-like 3 isoform X1

    Conserved Domains (6) summary
    smart00231
    Location:58180
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
    cd00054
    Location:555590
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00057
    Location:57179
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:800924
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam02210
    Location:402529
    Laminin_G_2; Laminin G domain
    cl00085
    Location:597642
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
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