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Tubal3 tubulin, alpha-like 3 [ Mus musculus (house mouse) ]

Gene ID: 238463, updated on 11-Apr-2024

Summary

Official Symbol
Tubal3provided by MGI
Official Full Name
tubulin, alpha-like 3provided by MGI
Primary source
MGI:MGI:3588215
See related
Ensembl:ENSMUSG00000021216 AllianceGenome:MGI:3588215
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 15.6), small intestine adult (RPKM 7.0) and 3 other tissues See more
Orthologs
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Genomic context

Location:
13 A1; 13 2.19 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (3974695..3985277)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (3924654..3935277)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene calmodulin 5 Neighboring gene STARR-seq mESC enhancer starr_33494 Neighboring gene STARR-positive B cell enhancer ABC_E9391 Neighboring gene neuroepithelial cell transforming gene 1 Neighboring gene STARR-positive B cell enhancer ABC_E7198 Neighboring gene urocortin 3 Neighboring gene aldo-keto reductase family 1, member C13 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 
involved_in mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
is_active_in microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033879.3NP_001029051.2  tubulin alpha chain-like 3 isoform 1

    See identical proteins and their annotated locations for NP_001029051.2

    Status: VALIDATED

    Source sequence(s)
    AC139323, AK135971, CO796832
    Consensus CDS
    CCDS49202.1
    UniProtKB/Swiss-Prot
    B9EJS3, Q3UX10
    Related
    ENSMUSP00000021639.7, ENSMUST00000021639.8
    Conserved Domains (2) summary
    PTZ00335
    Location:1443
    PTZ00335; tubulin alpha chain; Provisional
    cd02186
    Location:2442
    alpha_tubulin; The alpha-tubulin family
  2. NM_001426388.1NP_001413317.1  tubulin alpha chain-like 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC139323
  3. NM_001426389.1NP_001413318.1  tubulin alpha chain-like 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC139323
  4. NM_001426391.1NP_001413320.1  tubulin alpha chain-like 3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC139323

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    3974695..3985277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516479.3XP_006516542.1  tubulin alpha chain-like 3 isoform X1

    Conserved Domains (1) summary
    cd02186
    Location:12322
    alpha_tubulin; The alpha-tubulin family