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Xcr1 chemokine (C motif) receptor 1 [ Mus musculus (house mouse) ]

Gene ID: 23832, updated on 6-Sep-2021

Summary

Official Symbol
Xcr1provided by MGI
Official Full Name
chemokine (C motif) receptor 1provided by MGI
Primary source
MGI:MGI:1346338
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GP; XCR; Gpr5; Ccxcr; mXcr1; Ccxcr1
Expression
Biased expression in thymus adult (RPKM 2.0), spleen adult (RPKM 1.7) and 11 other tissues See more
Orthologs
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Genomic context

See Xcr1 in Genome Data Viewer
Location:
9 F4; 9 74.71 cM
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (123681380..123691094, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (123852315..123862029, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (123761436..123771246, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene FYVE and coiled-coil domain containing 1 Neighboring gene chemokine (C-X-C motif) receptor 6 Neighboring gene predicted gene, 51700 Neighboring gene autophagy-related 4B pseudogene Neighboring gene RIKEN cDNA 0610042G04 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables C-C chemokine binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables C-C chemokine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
chemokine XC receptor 1
Names
C motif-1/lymphotactin receptor
SCM1 receptor
XC chemokine receptor 1
chemokine (C motif) XC receptor 1
lymphotactin receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011798.4NP_035928.2  chemokine XC receptor 1

    See identical proteins and their annotated locations for NP_035928.2

    Status: VALIDATED

    Source sequence(s)
    AK040878
    UniProtKB/TrEMBL
    Q544D8, S4R1K3
    Conserved Domains (2) summary
    cd14964
    Location:4670
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:44306
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    123681380..123691094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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